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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1v7aFRCAdenosine deaminase3.5.4.4

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1v7aFRCAdenosine deaminase3.5.4.41.000
1ndzFR5Adenosine deaminase3.5.4.40.700
1o5rFR9Adenosine deaminase3.5.4.40.622
1umlFR4Adenosine deaminase3.5.4.40.616
2z7gEH9Adenosine deaminase3.5.4.40.614
1wxyFRKAdenosine deaminase3.5.4.40.600
1v79FR7Adenosine deaminase3.5.4.40.577
1ndyFR3Adenosine deaminase3.5.4.40.558
1qxlFR8Adenosine deaminase3.5.4.40.532