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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1uioHPRAdenosine deaminase3.5.4.4

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
1uioHPRAdenosine deaminase3.5.4.41.000
1fkwPURAdenosine deaminase3.5.4.40.622
1fkxPRHAdenosine deaminase3.5.4.40.610
1a4lDCFAdenosine deaminase3.5.4.40.587
2adaHPRAdenosine deaminase3.5.4.40.567
1v79FR7Adenosine deaminase3.5.4.40.502
2z7gEH9Adenosine deaminase3.5.4.40.501
1o5rFR9Adenosine deaminase3.5.4.40.495
4u0sADPAdenosine monophosphate-protein transferase FICD2.7.7.n10.488
1wxyFRKAdenosine deaminase3.5.4.40.485
1errRALEstrogen receptor/0.483
4qa2SHHHistone deacetylase 83.5.1.980.479
1dcyI3NPhospholipase A2, membrane associated/0.478
4xivACPChemotaxis protein CheA2.7.13.30.478
1qxlFR8Adenosine deaminase3.5.4.40.476
1ndyFR3Adenosine deaminase3.5.4.40.475
1v7aFRCAdenosine deaminase3.5.4.40.474
3dhcCYKN-acyl homoserine lactonase AiiA3.1.1.810.474
4g8zTOPDihydrofolate reductase1.5.1.30.473
1db56INPhospholipase A2, membrane associated/0.472
1z69F425,10-methylenetetrahydromethanopterin reductase/0.472
3hk1B64Fatty acid-binding protein, adipocyte/0.472
1zg32HIIsoflavone 4'-O-methyltransferase/0.471
2jfaRALEstrogen receptor/0.470
1ndzFR5Adenosine deaminase3.5.4.40.469
1umlFR4Adenosine deaminase3.5.4.40.468
4nmbFADBifunctional protein PutA/0.468
1ao8MTXDihydrofolate reductase1.5.1.30.466
1db48INPhospholipase A2, membrane associated/0.466
1kceCB3Thymidylate synthase/0.466
4ixfIXFDihydrofolate reductase1.5.1.30.466
1yinCM3Estrogen receptor/0.465
4pd5GEONucleoside permease/0.465
4qa0SHHHistone deacetylase 83.5.1.980.465
1iolESTEstradiol 17-beta-dehydrogenase 11.1.1.620.464
3el7PD3Proto-oncogene tyrosine-protein kinase Src2.7.10.20.464
3tm5SFGUncharacterized protein/0.464
2fziDH3Dihydrofolate reductase1.5.1.30.463
3gwfFADCyclohexanone monooxygenase/0.463
1opbRETRetinol-binding protein 2/0.462
3jsuKA5Bifunctional dihydrofolate reductase-thymidylate synthase/0.462
4a9mP9MBromodomain-containing protein 2/0.462
1trkTPPTransketolase 12.2.1.10.461
3d574HYThyroid hormone receptor beta/0.461
3qly55VUncharacterized protein/0.461
5iqgGDPBifunctional AAC/APH2.3.10.461
5cp4CAMCamphor 5-monooxygenase1.14.15.10.460
1itzTPPTransketolase, chloroplastic2.2.1.10.459
1kquBR4Phospholipase A2, membrane associated/0.458
1qzfCB3Bifunctional dihydrofolate reductase-thymidylate synthase/0.458
1vj3TABDihydrofolate reductase1.5.1.30.458
2i0y5CNMacrophage colony-stimulating factor 1 receptor2.7.10.10.458
2l0xGDPGTP-binding protein Rheb/0.458
3wixLC3Induced myeloid leukemia cell differentiation protein Mcl-1/0.458
4ryvZEAProtein LlR18A/0.458
2puiADPMethylthioribose kinase2.7.1.1000.457
4pd6URINucleoside permease/0.457
5dc5B3NHistone deacetylase 83.5.1.980.457
1s4dSAHUroporphyrinogen-III C-methyltransferase2.1.1.1070.456
3kdiA8SAbscisic acid receptor PYL2/0.456
3uq6ADNPutative adenosine kinase/0.456
4orkGDPBifunctional AAC/APH2.3.10.456
5dibNADBetaine-aldehyde dehydrogenase/0.456
1e26GPBDihydrofolate reductase1.5.1.30.455
1rd4L08Integrin alpha-L/0.455
2fhnBNIAvidin-related protein 4/5/0.455
3dheANDEstradiol 17-beta-dehydrogenase 11.1.1.620.455
5iqdGNPBifunctional AAC/APH2.3.10.455
2chx090Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform2.7.1.1530.454
2p7zOHTEstrogen-related receptor gamma/0.454
2xvu9DNSerum albumin/0.454
3dogNNNCyclin-dependent kinase 22.7.11.220.454
3k90A8SAbscisic acid receptor PYR1/0.454
3qfxCP6Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.454
3sai9DRDihydrofolate reductase/0.454
4ddrMMVDihydrofolate reductase1.5.1.30.454
4h9753SDihydrofolate reductase1.5.1.30.454
4lxhC1EAlpha/beta hydrolase fold/0.454
1xqcAEJEstrogen receptor/0.453
3ds6A17Mitogen-activated protein kinase 14/0.453
3oafOAGDihydrofolate reductase1.5.1.30.453
3pd3A3TThreonine--tRNA ligase6.1.1.30.453
3t3q9PLCytochrome P450 2A61.14.130.453
4dc0NDPPutative ketoacyl reductase1.3.10.453
4h4qFADBiphenyl dioxygenase ferredoxin reductase subunit/0.453
1ia3TQ5Dihydrofolate reductase1.5.1.30.452
1prcUQ1Reaction center protein L chain/0.452
1x7jGENEstrogen receptor beta/0.452
2btdADPPEP-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL2.70.452
2c31TZDOxalyl-CoA decarboxylase4.1.1.80.452
2fpcSCGStrictosidine synthase4.3.3.20.452
2vzmNRBCytochrome P450 monooxygenase PikC/0.452
2zwvSAHProbable ribosomal RNA small subunit methyltransferase/0.452
3inwJZBHeat shock protein HSP 90-alpha/0.452
3jpuTY4Transcriptional activator protein LasR/0.452
3qlzQLZUncharacterized protein/0.452
3zvuA8SAbscisic acid receptor PYR1/0.452
4l4bCAMCamphor 5-monooxygenase1.14.15.10.452
4l4cCAMCamphor 5-monooxygenase1.14.15.10.452
5cb3APRO-acetyl-ADP-ribose deacetylase/0.452
1f9aATPNicotinamide-nucleotide adenylyltransferase/0.451
2hl2SSAThreonine--tRNA ligase6.1.1.30.451
2oyfIACBasic phospholipase A2 VRV-PL-VIIIa3.1.1.40.451
3p3zP3ZPutative cytochrome P450/0.451
3tm4SAMUncharacterized protein/0.451
3znsNU7Histone deacetylase 73.5.1.980.451
4a30QMIGlycylpeptide N-tetradecanoyltransferase/0.451
4e960NSBromodomain-containing protein 4/0.451
4h9506UDihydrofolate reductase1.5.1.30.451
4wa9AXITyrosine-protein kinase ABL12.7.10.20.451
1ly3COGDihydrofolate reductase1.5.1.30.450
1sj0E4DEstrogen receptor/0.450
2bzsCB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.450
2c94TSF6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.450
3nxyD2HDihydrofolate reductase1.5.1.30.450
3uvp048Mitogen-activated protein kinase 14/0.450
4qemHC4Phospholipase A2 VRV-PL-VIIIa/0.450
1dnpMHFDeoxyribodipyrimidine photo-lyase4.1.99.30.449
1fmlRTLRetinol dehydratase/0.449
1phgMYTCamphor 5-monooxygenase1.14.15.10.449
3kjsDQ1Bifunctional dihydrofolate reductase-thymidylate synthase/0.449
3ssnMVIMycinamicin VI 2''-O-methyltransferase/0.449
4bqpVMYEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.449
4l4dCAMCamphor 5-monooxygenase1.14.15.10.449
4q8pCKRQueuine tRNA-ribosyltransferase2.4.2.290.449
1amoFADNADPH--cytochrome P450 reductase/0.448
1gebCAMCamphor 5-monooxygenase1.14.15.10.448
1s9eADBGag-Pol polyprotein2.7.7.490.448
1tkaN3TTransketolase 12.2.1.10.448
3dgaRJ1Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.448
3gxoMQAMitomycin biosynthesis 6-O-methyltransferase/0.448
3zxzKRWHepatocyte growth factor receptor2.7.10.10.448
4iui1GQEstrogen receptor/0.448
2qwqADPHeat shock cognate 71 kDa protein/0.447
2y1oT26UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.447
2yboSAHMethyltransferase/0.447
3c16FOKAdenylate cyclase type 2/0.447
3c16FOKAdenylate cyclase type 5/0.447
3ha5SFGHydroxymycolate synthase MmaA42.1.10.447
3pd2A3SThreonine--tRNA ligase6.1.1.30.447
3w9rA8SAbscisic acid receptor PYL9/0.447
4gi40EXQueuine tRNA-ribosyltransferase2.4.2.290.447
4iv21GREstrogen receptor/0.447
4tx9AMZPhosphoribosyl isomerase A/0.447
1g0rTHMGlucose-1-phosphate thymidylyltransferase/0.446
1kl2FONSerine hydroxymethyltransferase/0.446
1zx1CB1Ribosyldihydronicotinamide dehydrogenase [quinone]/0.446
2ggqTTPDual sugar-1-phosphate nucleotidylyltransferase/0.446
2rg6287Mitogen-activated protein kinase 14/0.446
3eon341Glutaryl-CoA dehydrogenase/0.446
3q43D66M1 family aminopeptidase3.4.110.446
3qgtCP6Bifunctional dihydrofolate reductase-thymidylate synthase/0.446
4bjx73BBromodomain-containing protein 4/0.446
4fps0UXQueuine tRNA-ribosyltransferase2.4.2.290.446
5iqfGDPBifunctional AAC/APH2.3.10.446
3uzaT4GAdenosine receptor A2a/0.446
1dajMOTDihydrofolate reductase1.5.1.30.445
1ht2ADPATP-dependent protease ATPase subunit HslU/0.445
2a3iC0RMineralocorticoid receptor/0.445
2c7xNRBCytochrome P450 monooxygenase PikC/0.445
2cgw3C3Serine/threonine-protein kinase Chk12.7.11.10.445
2gr1FADFerredoxin reductase/0.445
2hm9TRRDihydrofolate reductase1.5.1.30.445
2hydADPPutative multidrug export ATP-binding/permease protein SAV18663.6.30.445
2wgjVGHHepatocyte growth factor receptor2.7.10.10.445
2xf3J01Uncharacterized protein/0.445
2xvw9NRSerum albumin/0.445
2zb45OPProstaglandin reductase 21.3.1.480.445
3c0g3AMPeripheral plasma membrane protein CASK2.7.11.10.445
3l0lHC3Nuclear receptor ROR-gamma/0.445
3nefPYVAbscisic acid receptor PYL1/0.445
3uq9TBNPutative adenosine kinase/0.445
4bw1S5BBromodomain-containing protein 4/0.445
4egnTWOCytochrome P450/0.445
4eixNIMPhospholipase A2 VRV-PL-VIIIa/0.445
4ge40KEKynurenine/alpha-aminoadipate aminotransferase, mitochondrial2.6.1.390.445
4j6cSTRCytochrome P450 monooxygenase/0.445
4qerSTLPhospholipase A2 VRV-PL-VIIIa/0.445
1dyrTOPDihydrofolate reductase1.5.1.30.444
1e3kR18Progesterone receptor/0.444
1pkfEPDEpothilone C/D epoxidase1.140.444
2ftoCB3Thymidylate synthase/0.444
2gpvOHTEstrogen-related receptor gamma/0.444
3e01PZ2Gag-Pol polyprotein2.7.7.490.444
3k4s0MOcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.444
3uibSB2Putative mitogen-activated protein kinase/0.444
3vrwYS5Vitamin D3 receptor/0.444
4a9hTVPBromodomain-containing protein 2/0.444
4acc7YGGlycogen synthase kinase-3 beta2.7.11.260.444
4ap1NAPSteroid monooxygenase/0.444
4btkDTQTau-tubulin kinase 12.7.11.10.444
4dpdDHFBifunctional dihydrofolate reductase-thymidylate synthase/0.444
4i8vBHFCytochrome P450 1A11.14.14.10.444
4iw8KN3Estrogen receptor/0.444
4kak06UDihydrofolate reductase1.5.1.30.444
4kba1QMCasein kinase I isoform delta2.7.11.10.444
4mv3ACPBiotin carboxylase6.3.4.140.444
5aluHD2Bifunctional epoxide hydrolase 23.1.3.760.444
1df8BTNStreptavidin/0.443
1gwqZTWEstrogen receptor/0.443
1iiuRTLRetinol-binding protein 4/0.443
1j3kWRABifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.443
1jomFFODihydrofolate reductase1.5.1.30.443
1jtqLY3Thymidylate synthase/0.443
1mkdZARcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.443
1t13INI6,7-dimethyl-8-ribityllumazine synthase 2/0.443
1ykdCMPAdenylate cyclase/0.443
2bbqPFGThymidylate synthase/0.443
2w4iVGAGlutamate racemase/0.443
3deyDHTEstradiol 17-beta-dehydrogenase 11.1.1.620.443
3g4gD71cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.443
3klmDHTEstradiol 17-beta-dehydrogenase 11.1.1.620.443
3um5CP6Bifunctional dihydrofolate reductase-thymidylate synthase/0.443
4as76LXKinesin-like protein KIF11/0.443
4fqsLYAThymidylate synthase ThyA/0.443
4meo25VBromodomain-containing protein 4/0.443
4oal245Cytokinin dehydrogenase 4/0.443
4pkwGM6Lethal factor3.4.24.830.443
1hfqMOTDihydrofolate reductase1.5.1.30.442
1k749CRRetinoic acid receptor RXR-alpha/0.442
1mczTDPBenzoylformate decarboxylase4.1.1.70.442
1phePIYCamphor 5-monooxygenase1.14.15.10.442
1suoCPZCytochrome P450 2B41.14.14.10.442
1uy7PU4Heat shock protein HSP 90-alpha/0.442
2b5j3ACGag-Pol polyprotein2.7.7.490.442
2jizADPATP synthase subunit beta, mitochondrial3.6.3.140.442
2oaxSNLMineralocorticoid receptor/0.442
2y67N21UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.442
3oquA8SAbscisic acid receptor PYL9/0.442
4cfkLY2Bromodomain-containing protein 4/0.442
4eh9IRGMitogen-activated protein kinase 14/0.442
4ixc1JDGlucokinase2.7.1.20.442
4ixeIXEDihydrofolate reductase1.5.1.30.442
4k39SAMAnaerobic sulfatase-maturating enzyme1.8.980.442
1cqsEQUSteroid Delta-isomerase5.3.3.10.441
1ia2TQ4Dihydrofolate reductase1.5.1.30.441
1ie4T44Transthyretin/0.441
1lhuESTSex hormone-binding globulin/0.441
1mczRMNBenzoylformate decarboxylase4.1.1.70.441
1x2hLPALipoate-protein ligase A6.3.1.200.441
1yqj6NPMitogen-activated protein kinase 14/0.441
2a1nCAMCamphor 5-monooxygenase1.14.15.10.441
2bikBI1Serine/threonine-protein kinase pim-12.7.11.10.441
2i9pNAD3-hydroxyisobutyrate dehydrogenase, mitochondrial1.1.1.310.441
2izsBRQCasein kinase I isoform gamma-32.7.11.10.441
2vmyFFOSerine hydroxymethyltransferase/0.441
2w3wVG9Dihydrofolate reductase/0.441
3dyaPZLGag-Pol polyprotein2.7.7.490.441
3g493G4Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.441
3gcq1BUMitogen-activated protein kinase 14/0.441
3iro2CYBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.441
3k2hLYABifunctional dihydrofolate reductase-thymidylate synthase/0.441
3o6o94MHeat shock protein 83/0.441
3tkuM77Serine/threonine-protein kinase MRCK beta2.7.11.10.441
4eqgA5AHistidine triad nucleotide-binding protein 130.441
4uyg73BBromodomain-containing protein 2/0.441
5dozNDPJamJ/0.441
1axwMTXThymidylate synthase/0.440
1ddsMTXDihydrofolate reductase1.5.1.30.440
1dxrMSTReaction center protein L chain/0.440
1iwjCAMCamphor 5-monooxygenase1.14.15.10.440
1jqiCAAShort-chain specific acyl-CoA dehydrogenase, mitochondrial/0.440
1ovmTPPIndole-3-pyruvate decarboxylase4.1.1.740.440
1rctNOSPurine nucleoside phosphorylase2.4.2.10.440
1vruAAPGag-Pol polyprotein2.7.7.490.440
2blcCP7Bifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.440
2c3cNAP2-oxopropyl-CoM reductase, carboxylating1.8.1.50.440
2hvcLGDAndrogen receptor/0.440
2o1xTDP1-deoxy-D-xylulose-5-phosphate synthase2.2.1.70.440
2p15EZTEstrogen receptor/0.440
2qe4JJ3Estrogen receptor/0.440
2qg2A91Heat shock protein HSP 90-alpha/0.440
2zymACXPeriplasmic binding protein/0.440
3at4CCKCasein kinase II subunit alpha2.7.11.10.440
3cz09ODPheromone-binding protein ASP1/0.440
3exnACOProbable acetyltransferase/0.440
3i1y33NBifunctional epoxide hydrolase 23.3.2.100.440
3iqfE4MF420-dependent methylenetetrahydromethanopterin dehydrogenase1.5.98.10.440
3kdjA8SAbscisic acid receptor PYL1/0.440
3kslSZHProtein farnesyltransferase subunit beta2.5.1.580.440
3nmnPYVAbscisic acid receptor PYL1/0.440
3owj1ELCasein kinase II subunit alpha2.7.11.10.440
4b1iA8PPoly(ADP-ribose) glycohydrolase3.2.1.1430.440
4hyh1AMSerine/threonine-protein kinase Chk12.7.11.10.440
4wdb2AM2',3'-cyclic-nucleotide 3'-phosphodiesterase3.1.4.370.440
4k5y1Q5Corticotropin-releasing factor receptor 1/0.440