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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1uhhCZPAequorin-2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1uhhCZPAequorin-2/1.000
1uhjCZBAequorin-2/0.620
1ej3CZHAequorin-2/0.614
4nqgCZHMitrocomin/0.589
4n1fCZHObelin/0.587
1qv1CZHObelin/0.586
1el4CTZObelin/0.575
1jf0CZHObelin/0.565
1jf2CZHObelin/0.558
1qv0CZHObelin/0.547
1s36CEIObelin/0.506
4mrxCZHObelin/0.494
1q0zAKAAclacinomycin methylesterase RdmC3.1.1.950.471
4b144XBGlycylpeptide N-tetradecanoyltransferase/0.458
3mj4URMUDP-galactopyranose mutase/0.456
2po7CHDFerrochelatase, mitochondrial4.99.1.10.441
1q0rAKTAclacinomycin methylesterase RdmC3.1.1.950.440
4b117I1Glycylpeptide N-tetradecanoyltransferase/0.440