sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1txr | BES | Bacterial leucyl aminopeptidase | 3.4.11.10 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 1txr | BES | Bacterial leucyl aminopeptidase | 3.4.11.10 | 1.000 | |
| 1xry | BES | Bacterial leucyl aminopeptidase | 3.4.11.10 | 0.735 | |
| 3h3r | 14H | Collagen type IV alpha-3-binding protein | / | 0.516 | |
| 3h3q | H13 | Collagen type IV alpha-3-binding protein | / | 0.502 | |
| 4bb3 | KKA | Isopenicillin N synthase | 1.21.3.1 | 0.499 | |
| 1r5h | AO2 | Methionine aminopeptidase 2 | / | 0.494 | |
| 3jpu | TY4 | Transcriptional activator protein LasR | / | 0.492 | |
| 4fxy | 0W2 | Neurolysin, mitochondrial | 3.4.24.16 | 0.490 | |
| 4kov | KOV | Uncharacterized protein | / | 0.489 | |
| 1ay0 | TPP | Transketolase 1 | 2.2.1.1 | 0.486 | |
| 3u9f | CLM | Chloramphenicol acetyltransferase | 2.3.1.28 | 0.486 | |
| 1w6j | R71 | Lanosterol synthase | 5.4.99.7 | 0.483 | |
| 3jsw | JAR | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.483 | |
| 4gh6 | LUO | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.481 | |
| 3h3t | 16H | Collagen type IV alpha-3-binding protein | / | 0.480 | |
| 3bw4 | FMN | Putative 2-nitropropane dioxygenase | / | 0.479 | |
| 3dyl | IBM | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.477 | |
| 2zhf | 49U | Prothrombin | 3.4.21.5 | 0.476 | |
| 4dk7 | 0KS | Oxysterols receptor LXR-beta | / | 0.476 | |
| 4g2l | 0WL | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.476 | |
| 4zu4 | 4TG | WxcM-like protein | / | 0.476 | |
| 3dds | 26B | Glycogen phosphorylase, liver form | 2.4.1.1 | 0.474 | |
| 2acl | L05 | Oxysterols receptor LXR-alpha | / | 0.473 | |
| 2gfx | PMN | 3-oxoacyl-[acyl-carrier-protein] synthase 2 | 2.3.1.179 | 0.473 | |
| 3dy8 | IBM | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.472 | |
| 4a80 | 2AN | Major pollen allergen Bet v 1-A | / | 0.470 | |
| 3af0 | GDP | Pantothenate kinase | 2.7.1.33 | 0.469 | |
| 1jwt | BLI | Prothrombin | 3.4.21.5 | 0.468 | |
| 3ch6 | 311 | Corticosteroid 11-beta-dehydrogenase isozyme 1 | 1.1.1.146 | 0.468 | |
| 3e8x | NAP | BH1520 protein | / | 0.468 | |
| 4e90 | 7RG | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.468 | |
| 1obn | ASV | Isopenicillin N synthase | 1.21.3.1 | 0.467 | |
| 1r5g | AO1 | Methionine aminopeptidase 2 | / | 0.467 | |
| 1hb1 | OCV | Isopenicillin N synthase | 1.21.3.1 | 0.466 | |
| 3apw | DP0 | Alpha-1-acid glycoprotein 2 | / | 0.466 | |
| 3dyl | PCG | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.466 | |
| 1uxk | NAD | Malate dehydrogenase | / | 0.465 | |
| 3bgx | TMP | Thymidylate synthase | / | 0.465 | |
| 5irn | ADP | Nucleotide binding oligomerization domain containing 2 | / | 0.465 | |
| 2rqf | JH3 | Hemolymph juvenile hormone binding protein | / | 0.464 | |
| 3hdy | GDU | UDP-galactopyranose mutase | / | 0.464 | |
| 1kqw | RTL | Cellular retinol-binding protein type II | / | 0.463 | |
| 3oqk | S52 | Renin | 3.4.23.15 | 0.463 | |
| 1xl8 | 152 | Peroxisomal carnitine O-octanoyltransferase | 2.3.1.137 | 0.462 | |
| 3h0b | B35 | Beta-secretase 1 | 3.4.23.46 | 0.462 | |
| 2fbw | CBE | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial | 1.3.5.1 | 0.461 | |
| 2fbw | CBE | Succinate dehydrogenase cytochrome b, large subunit | / | 0.461 | |
| 2v13 | C40 | Renin | 3.4.23.15 | 0.461 | |
| 1drh | NAP | Dihydrofolate reductase | 1.5.1.3 | 0.460 | |
| 1fm4 | DXC | Major pollen allergen Bet v 1-L | / | 0.460 | |
| 1nmk | SFM | Peptidyl-prolyl cis-trans isomerase A | 5.2.1.8 | 0.460 | |
| 1o5g | CR9 | Prothrombin | 3.4.21.5 | 0.460 | |
| 2bvs | 2CE | Prothrombin | 3.4.21.5 | 0.460 | |
| 3dyq | IBM | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.460 | |
| 4an4 | DUD | Putative glycosyl transferase | / | 0.460 | |
| 4h9t | HL4 | Phosphotriesterase | / | 0.460 | |
| 1i7p | FAD | NADH-cytochrome b5 reductase 3 | 1.6.2.2 | 0.459 | |
| 1xh7 | R96 | cAMP-dependent protein kinase catalytic subunit alpha | 2.7.11.11 | 0.459 | |
| 3dys | IBM | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.459 | |
| 3zoi | M2W | Isopenicillin N synthase | 1.21.3.1 | 0.459 | |
| 1rq1 | FAD | Endoplasmic oxidoreductin-1 | 1.8.4 | 0.458 | |
| 2y60 | M8F | Isopenicillin N synthase | 1.21.3.1 | 0.458 | |
| 2zda | 32U | Prothrombin | 3.4.21.5 | 0.458 | |
| 3ix8 | TX3 | Transcriptional activator protein LasR | / | 0.458 | |
| 4jlm | 1NN | Deoxycytidine kinase | 2.7.1.74 | 0.458 | |
| 1kh3 | ANP | Argininosuccinate synthase | / | 0.457 | |
| 1tkc | M6T | Transketolase 1 | 2.2.1.1 | 0.457 | |
| 2cmf | F11 | Acetylcholinesterase | 3.1.1.7 | 0.457 | |
| 2g24 | 7IG | Renin | 3.4.23.15 | 0.457 | |
| 2gmh | FAD | Electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial | 1.5.5.1 | 0.457 | |
| 2ixk | TDO | dTDP-4-dehydrorhamnose 3,5-epimerase | 5.1.3.13 | 0.457 | |
| 2pb6 | SAH | Diphthine synthase | / | 0.457 | |
| 2zdv | 37U | Prothrombin | 3.4.21.5 | 0.457 | |
| 2zfq | 45U | Prothrombin | 3.4.21.5 | 0.457 | |
| 3oia | A31 | Camphor 5-monooxygenase | 1.14.15.1 | 0.457 | |
| 1nhp | FAD | NADH peroxidase | 1.11.1.1 | 0.456 | |
| 2oz5 | 7XY | Uncharacterized protein | / | 0.456 | |
| 4a6r | TA8 | Probable aminotransferase | / | 0.456 | |
| 4lzw | THM | Uridine phosphorylase | / | 0.456 | |
| 1qyw | 5SD | Estradiol 17-beta-dehydrogenase 1 | 1.1.1.62 | 0.455 | |
| 1umk | FAD | NADH-cytochrome b5 reductase 3 | 1.6.2.2 | 0.455 | |
| 1zgb | A1E | Acetylcholinesterase | 3.1.1.7 | 0.455 | |
| 2zs8 | ADP | Pantothenate kinase | 2.7.1.33 | 0.455 | |
| 3atz | FMN | Prostaglandin F2a synthase | / | 0.455 | |
| 3f63 | GTX | Glutathione transferase GST1-4 | / | 0.455 | |
| 3hat | GLY_VAL_ARG_RNG | Prothrombin | 3.4.21.5 | 0.455 | |
| 3jun | AKD | Phenazine biosynthesis protein A/B | / | 0.455 | |
| 4kot | CE3 | Uncharacterized protein | / | 0.455 | |
| 4zzi | 1NS | NAD-dependent protein deacetylase sirtuin-1 | 3.5.1 | 0.455 | |
| 5dhh | DGW | Nociceptin receptor | / | 0.455 | |
| 1nup | NMN | Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 3 | / | 0.454 | |
| 1odc | A8B | Acetylcholinesterase | 3.1.1.7 | 0.454 | |
| 1ypk | CCR | Prothrombin | 3.4.21.5 | 0.454 | |
| 2g25 | TDK | Pyruvate dehydrogenase E1 component | 1.2.4.1 | 0.454 | |
| 2j9g | ANP | Biotin carboxylase | 6.3.4.14 | 0.454 | |
| 2vcx | D26 | Hematopoietic prostaglandin D synthase | / | 0.454 | |
| 3pqb | VGP | Putative oxidoreductase | / | 0.454 | |
| 3w6u | NAP | 6-phosphogluconate dehydrogenase, NAD-binding protein | / | 0.454 | |
| 4a8v | 2AN | Major pollen allergen Bet v 1-J | / | 0.454 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.453 | |
| 2d1o | FA4 | Stromelysin-1 | 3.4.24.17 | 0.453 | |
| 3c1o | NAP | Eugenol synthase | / | 0.453 | |
| 3h3s | H15 | Collagen type IV alpha-3-binding protein | / | 0.453 | |
| 3ix4 | TX1 | Transcriptional activator protein LasR | / | 0.453 | |
| 4a86 | 2AN | Major pollen allergen Bet v 1-A | / | 0.453 | |
| 4b63 | NAP | L-ornithine N(5)-monooxygenase | / | 0.453 | |
| 4na4 | A1R | Poly(ADP-ribose) glycohydrolase | 3.2.1.143 | 0.453 | |
| 5c1m | CLR | Mu-type opioid receptor | / | 0.453 | |
| 1gsf | EAA | Glutathione S-transferase A1 | 2.5.1.18 | 0.452 | |
| 1hdc | CBO | 3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase | 1.1.1.53 | 0.452 | |
| 1n4p | CYS_VAL_ILE_LEU_GER | Geranylgeranyl transferase type-1 subunit beta | 2.5.1.59 | 0.452 | |
| 2i4q | UA4 | Renin | 3.4.23.15 | 0.452 | |
| 2qd4 | CHD | Ferrochelatase, mitochondrial | 4.99.1.1 | 0.452 | |
| 2ym1 | FAD | Phenylacetone monooxygenase | 1.14.13.92 | 0.452 | |
| 2zc9 | 22U | Prothrombin | 3.4.21.5 | 0.452 | |
| 3gf4 | UPG | UDP-galactopyranose mutase | 5.4.99.9 | 0.452 | |
| 4emd | C5P | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase | / | 0.452 | |
| 2g20 | L1A | Renin | 3.4.23.15 | 0.451 | |
| 2gvd | FKP | Adenylate cyclase type 2 | / | 0.451 | |
| 2gvd | FKP | Adenylate cyclase type 5 | / | 0.451 | |
| 2v16 | C47 | Renin | 3.4.23.15 | 0.451 | |
| 3b1d | PLS | BetaC-S lyase | / | 0.451 | |
| 3g0g | RUM | Dipeptidyl peptidase 4 | / | 0.451 | |
| 4ffr | ATP | Uncharacterized protein | / | 0.451 | |
| 4zwg | DTP | Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 | 3.1.5 | 0.451 | |
| 1w06 | W05 | Isopenicillin N synthase | 1.21.3.1 | 0.450 | |
| 2hxz | H7J | Cathepsin S | 3.4.22.27 | 0.450 | |
| 2vd0 | D27 | Hematopoietic prostaglandin D synthase | / | 0.450 | |
| 3hnz | PMN | 3-oxoacyl-[acyl-carrier-protein] synthase 2 | 2.3.1.179 | 0.450 | |
| 3p9t | TCL | Repressor | / | 0.450 | |
| 2g1a | 5HG | Class B acid phosphatase | 3.1.3.2 | 0.449 | |
| 2g1r | 3IG | Renin | 3.4.23.15 | 0.449 | |
| 2gqp | PA7 | Endoplasmin | / | 0.449 | |
| 2jb4 | A14 | Isopenicillin N synthase | 1.21.3.1 | 0.449 | |
| 2psw | COA | N-alpha-acetyltransferase 50 | / | 0.449 | |
| 3af1 | GDP | Pantothenate kinase | 2.7.1.33 | 0.449 | |
| 3q43 | D66 | M1 family aminopeptidase | 3.4.11 | 0.449 | |
| 3tvq | DQH | Multifunctional cyclase-dehydratase-3-O-methyl transferase TcmN | 2.1.1 | 0.449 | |
| 4bc7 | FAD | Alkyldihydroxyacetonephosphate synthase, peroxisomal | 2.5.1.26 | 0.449 | |
| 1c3x | 8IG | Purine nucleoside phosphorylase | 2.4.2.1 | 0.448 | |
| 1uzw | CDH | Isopenicillin N synthase | 1.21.3.1 | 0.448 | |
| 2emu | SAH | Diphthine synthase | / | 0.448 | |
| 2g1o | 2IG | Renin | 3.4.23.15 | 0.448 | |
| 3bw2 | FMN | Putative 2-nitropropane dioxygenase | / | 0.448 | |
| 3qv1 | NAD | Glyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic | 1.2.1.13 | 0.448 | |
| 3w3l | RX8 | Toll-like receptor 8 | / | 0.448 | |
| 3wle | NAD | (R)-specific carbonyl reductase | / | 0.448 | |
| 4dxl | C5P | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase | / | 0.448 | |
| 4ejn | 0R4 | RAC-alpha serine/threonine-protein kinase | 2.7.11.1 | 0.448 | |
| 5c1g | GDU | Histo-blood group ABO system transferase | / | 0.448 | |
| 1gj4 | 132 | Prothrombin | 3.4.21.5 | 0.447 | |
| 1mu8 | CDB | Prothrombin | 3.4.21.5 | 0.447 | |
| 1txt | CAA | HMG-CoA synthase | / | 0.447 | |
| 1xrp | PRO_LEU_GLY_GLY | Proline iminopeptidase | 3.4.11.5 | 0.447 | |
| 2r2m | I50 | Prothrombin | 3.4.21.5 | 0.447 | |
| 4psb | GA3 | Cytokinin-specific binding protein | / | 0.447 | |
| 1eq2 | NAP | ADP-L-glycero-D-manno-heptose-6-epimerase | / | 0.446 | |
| 1pq6 | 965 | Oxysterols receptor LXR-beta | / | 0.446 | |
| 1szf | FMN | Cytochrome b2, mitochondrial | 1.1.2.3 | 0.446 | |
| 2ea4 | F79 | Methionine aminopeptidase 2 | / | 0.446 | |
| 2emr | SAH | Diphthine synthase | / | 0.446 | |
| 2x06 | NAD | L-sulfolactate dehydrogenase | / | 0.446 | |
| 2zev | B71 | Geranylgeranyl pyrophosphate synthase | / | 0.446 | |
| 3ae4 | N1M | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial | 1.3.5.1 | 0.446 | |
| 3ae4 | N1M | Succinate dehydrogenase cytochrome b560 subunit, mitochondrial | / | 0.446 | |
| 1lwl | DSO | Camphor 5-monooxygenase | 1.14.15.1 | 0.445 | |
| 1ydt | IQB | cAMP-dependent protein kinase catalytic subunit alpha | 2.7.11.11 | 0.445 | |
| 2uuk | 897 | Prothrombin | 3.4.21.5 | 0.445 | |
| 2ydx | NAP | Methionine adenosyltransferase 2 subunit beta | / | 0.445 | |
| 2zhe | 13U | Prothrombin | 3.4.21.5 | 0.445 | |
| 3c1k | T15 | Prothrombin | 3.4.21.5 | 0.445 | |
| 3d91 | REM | Renin | 3.4.23.15 | 0.445 | |
| 3g0d | XIH | Dipeptidyl peptidase 4 | / | 0.445 | |
| 3uzz | TES | 3-oxo-5-beta-steroid 4-dehydrogenase | / | 0.445 | |
| 4ax9 | N5N | Prothrombin | 3.4.21.5 | 0.445 | |
| 4kc2 | WS2 | Histo-blood group ABO system transferase | / | 0.445 | |
| 4klv | KLV | Uncharacterized protein | / | 0.445 | |
| 6std | MS2 | Scytalone dehydratase | 4.2.1.94 | 0.445 | |
| 1bk0 | ACV | Isopenicillin N synthase | 1.21.3.1 | 0.444 | |
| 1eve | E20 | Acetylcholinesterase | 3.1.1.7 | 0.444 | |
| 1hb3 | SCV | Isopenicillin N synthase | 1.21.3.1 | 0.444 | |
| 2gv8 | NDP | Thiol-specific monooxygenase | 1.14.13 | 0.444 | |
| 3dy8 | 5GP | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.444 | |
| 4er6 | AW2 | Histone-lysine N-methyltransferase, H3 lysine-79 specific | 2.1.1.43 | 0.444 | |
| 4x7u | ZM3 | Mycinamicin III 3''-O-methyltransferase | 2.1.1.237 | 0.444 | |
| 1s63 | 778 | Protein farnesyltransferase subunit beta | 2.5.1.58 | 0.443 | |
| 1xm1 | GAH | Prothrombin | 3.4.21.5 | 0.443 | |
| 2w98 | P1Z | Prostaglandin reductase 2 | 1.3.1.48 | 0.443 | |
| 3fpz | AHZ | Thiamine thiazole synthase | / | 0.443 | |
| 3qtv | 06P | Prothrombin | 3.4.21.5 | 0.443 | |
| 4mlp | 2CX | Cryptochrome-2 | / | 0.443 | |
| 1ahi | CHO | 7-alpha-hydroxysteroid dehydrogenase | 1.1.1.159 | 0.442 | |
| 1ghv | 120 | Prothrombin | 3.4.21.5 | 0.442 | |
| 1nm6 | L86 | Prothrombin | 3.4.21.5 | 0.442 | |
| 1svg | I04 | cAMP-dependent protein kinase catalytic subunit alpha | 2.7.11.11 | 0.442 | |
| 1yw7 | A41 | Methionine aminopeptidase 2 | / | 0.442 | |
| 2flh | ZEA | Cytokinin-specific binding protein | / | 0.442 | |
| 2ivi | ACW | Isopenicillin N synthase | 1.21.3.1 | 0.442 | |
| 2vbp | VB1 | Isopenicillin N synthase | 1.21.3.1 | 0.442 | |
| 2znp | K55 | Peroxisome proliferator-activated receptor delta | / | 0.442 | |
| 3dhk | 23U | Prothrombin | 3.4.21.5 | 0.442 | |
| 3ozd | 4CT | S-methyl-5'-thioadenosine phosphorylase | / | 0.442 | |
| 3q9b | B3N | Acetylpolyamine amidohydrolase | / | 0.442 | |
| 3qi4 | IBM | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.442 | |
| 3uic | NAD | Enoyl-[acyl-carrier-protein] reductase [NADH] | / | 0.442 | |
| 3ukf | GDU | UDP-galactopyranose mutase | / | 0.442 | |
| 4a83 | DXC | Major pollen allergen Bet v 1-A | / | 0.442 | |
| 4dc0 | NDP | Putative ketoacyl reductase | 1.3.1 | 0.442 | |
| 4iql | FMN | Enoyl-(Acyl-carrier-protein) reductase II | / | 0.442 | |
| 4yao | FAD | NADPH--cytochrome P450 reductase | / | 0.442 | |
| 5kwv | ANP | Pantothenate synthetase | / | 0.442 | |
| 1lf2 | R37 | Plasmepsin-2 | 3.4.23.39 | 0.441 | |
| 1n2g | APC | Pantothenate synthetase | 6.3.2.1 | 0.441 | |
| 1tll | FAD | Nitric oxide synthase, brain | 1.14.13.39 | 0.441 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.441 | |
| 1zxm | ANP | DNA topoisomerase 2-alpha | 5.99.1.3 | 0.441 | |
| 2cnd | FAD | Nitrate reductase [NADH] | 1.7.1.1 | 0.441 | |
| 2d81 | RB3 | Poly(3-hydroxybutyrate) depolymerase | / | 0.441 | |
| 2eeq | SAH | Diphthine synthase | / | 0.441 | |
| 2gjl | FMN | Nitronate monooxygenase | 1.13.12.16 | 0.441 | |
| 2q2v | NAD | Beta-D-hydroxybutyrate dehydrogenase | / | 0.441 | |
| 2yy2 | IBM | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.441 | |
| 2zi2 | 24U | Prothrombin | 3.4.21.5 | 0.441 | |
| 2znk | 31U | Prothrombin | 3.4.21.5 | 0.441 | |
| 3k3e | PDB | High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A | / | 0.441 | |
| 3pn4 | BB2 | Peptide deformylase 1B, chloroplastic/mitochondrial | 3.5.1.88 | 0.441 | |
| 3upk | UD1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | / | 0.441 | |
| 4f1l | 0RY | Poly [ADP-ribose] polymerase 14 | 2.4.2.30 | 0.441 | |
| 4kos | 4KO | Uncharacterized protein | / | 0.441 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.441 | |
| 1d9i | 00P | Prothrombin | 3.4.21.5 | 0.440 | |
| 1h2b | NAJ | NAD-dependent alcohol dehydrogenase | / | 0.440 | |
| 1q23 | FUA | Chloramphenicol acetyltransferase | 2.3.1.28 | 0.440 | |
| 1u65 | CP0 | Acetylcholinesterase | 3.1.1.7 | 0.440 | |
| 1xe6 | 5FP | Plasmepsin-2 | 3.4.23.39 | 0.440 | |
| 1yre | COA | Uncharacterized protein | / | 0.440 | |
| 2avi | BTN | Avidin | / | 0.440 | |
| 2c1z | U2F | Anthocyanidin 3-O-glucosyltransferase 2 | 2.4.1.115 | 0.440 | |
| 2e15 | SAH | Diphthine synthase | / | 0.440 | |
| 2ew5 | Y12 | Peptide deformylase | / | 0.440 | |
| 2gyu | HI6 | Acetylcholinesterase | 3.1.1.7 | 0.440 | |
| 2zff | 53U | Prothrombin | 3.4.21.5 | 0.440 | |
| 2zg0 | 50U | Prothrombin | 3.4.21.5 | 0.440 | |
| 3c27 | DKK | Prothrombin | 3.4.21.5 | 0.440 | |
| 3c3x | NAP | Eugenol synthase 1 | 1.1.1.318 | 0.440 | |
| 3eku | CY9 | Actin-5C | / | 0.440 | |
| 3k4s | 0MO | cAMP-specific 3',5'-cyclic phosphodiesterase 4D | 3.1.4.53 | 0.440 | |
| 3tfu | PL8 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase | 2.6.1.62 | 0.440 | |
| 4a5s | N7F | Dipeptidyl peptidase 4 | / | 0.440 | |
| 4ccq | NAP | Thioredoxin reductase | / | 0.440 | |
| 4nmd | FDA | Bifunctional protein PutA | / | 0.440 | |
| 5dw6 | 0T1 | Succinyl-CoA:acetate CoA-transferase | / | 0.440 |