sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1trk | TPP | Transketolase 1 | 2.2.1.1 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 1trk | TPP | Transketolase 1 | 2.2.1.1 | 1.000 | |
| 2r5n | TPP | Transketolase 1 | / | 0.653 | |
| 1itz | TPP | Transketolase, chloroplastic | 2.2.1.1 | 0.633 | |
| 1tka | N3T | Transketolase 1 | 2.2.1.1 | 0.602 | |
| 3upt | TPP | Transketolase | / | 0.598 | |
| 1ay0 | TPP | Transketolase 1 | 2.2.1.1 | 0.595 | |
| 1tkb | N1T | Transketolase 1 | 2.2.1.1 | 0.593 | |
| 1ngs | TPP | Transketolase 1 | 2.2.1.1 | 0.582 | |
| 1tkc | M6T | Transketolase 1 | 2.2.1.1 | 0.566 | |
| 2g25 | TDK | Pyruvate dehydrogenase E1 component | 1.2.4.1 | 0.547 | |
| 3rim | TPP | Transketolase | 2.2.1.1 | 0.524 | |
| 1umc | TDP | 2-oxoisovalerate dehydrogenase subunit alpha | 1.2.4.4 | 0.513 | |
| 1umc | TDP | 2-oxoisovalerate dehydrogenase subunit beta | 1.2.4.4 | 0.513 | |
| 1gpu | THD | Transketolase 1 | 2.2.1.1 | 0.511 | |
| 2j9f | THV | 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial | 1.2.4.4 | 0.506 | |
| 2j9f | THV | 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial | 1.2.4.4 | 0.506 | |
| 2o1s | TDP | 1-deoxy-D-xylulose-5-phosphate synthase | 2.2.1.7 | 0.485 | |
| 2o1x | TDP | 1-deoxy-D-xylulose-5-phosphate synthase | 2.2.1.7 | 0.481 | |
| 1rp7 | TZD | Pyruvate dehydrogenase E1 component | 1.2.4.1 | 0.477 | |
| 3zhu | TD8 | Multifunctional 2-oxoglutarate metabolism enzyme | 1.2.4.2 | 0.471 | |
| 3lq4 | TDP | Pyruvate dehydrogenase E1 component | 1.2.4.1 | 0.466 | |
| 3lpf | Z77 | Beta-glucuronidase | 3.2.1.31 | 0.450 | |
| 2v59 | LZK | Biotin carboxylase | 6.3.4.14 | 0.447 | |
| 3zht | TD9 | Multifunctional 2-oxoglutarate metabolism enzyme | 1.2.4.2 | 0.447 | |
| 4k9p | TPP | Benzoylformate decarboxylase | 4.1.1.7 | 0.447 | |
| 3lq2 | TDP | Pyruvate dehydrogenase E1 component | 1.2.4.1 | 0.444 | |
| 4k9o | TPP | Benzoylformate decarboxylase | 4.1.1.7 | 0.444 | |
| 2v3w | TPP | Benzoylformate decarboxylase | 4.1.1.7 | 0.443 | |
| 2iea | TDP | Pyruvate dehydrogenase E1 component | 1.2.4.1 | 0.441 | |
| 3gwf | FAD | Cyclohexanone monooxygenase | / | 0.440 |