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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1tdoFADL-amino-acid oxidase1.4.3.2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1tdoFADL-amino-acid oxidase1.4.3.21.000
1tdkFADL-amino-acid oxidase1.4.3.20.646
1tdnFADL-amino-acid oxidase1.4.3.20.623
1f8rFADL-amino-acid oxidase1.4.3.20.582
3kveFADL-amino-acid oxidase/0.558
5g3sFDAFlavin-dependent L-tryptophan oxidase VioA/0.509
5g3tFDAFlavin-dependent L-tryptophan oxidase VioA/0.490
4i58FADCyclohexylamine Oxidase/0.476
3qj4FADRenalase/0.473
2babFADPutative aminooxidase/0.450
3kkjFADRenalase/0.442