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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1t48BB3Tyrosine-protein phosphatase non-receptor type 13.1.3.48

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
1t48BB3Tyrosine-protein phosphatase non-receptor type 13.1.3.481.000
3arvSAUChitinase A/0.500
4nbl2J6Caspase-63.4.22.590.489
3lfeZ84Mitogen-activated protein kinase 14/0.485
1zklIBMHigh affinity cAMP-specific 3',5'-cyclic phosphodiesterase 7A3.1.4.530.481
2jc6QPPCalcium/calmodulin-dependent protein kinase type 1D2.7.11.170.481
4b4vL34Bifunctional protein FolD/0.481
1oc1ASVIsopenicillin N synthase1.21.3.10.480
1zknIBMcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.479
2y60M8FIsopenicillin N synthase1.21.3.10.478
4hqvQEIQueuine tRNA-ribosyltransferase2.4.2.290.478
4dbw511Aldo-keto reductase family 1 member C3/0.477
4ea0651Dehydrosqualene synthase/0.477
1hb3SCVIsopenicillin N synthase1.21.3.10.476
1r8qAFBCytohesin-2/0.476
1r8qAFBADP-ribosylation factor 1/0.476
1ygjRMCPyridoxal kinase2.7.1.350.476
2vt4P32Beta-1 adrenergic receptor/0.476
2yneYNEGlycylpeptide N-tetradecanoyltransferase/0.476
4fa30SLAldo-keto reductase family 1 member C3/0.476
4nbiD3YD-tyrosyl-tRNA(Tyr) deacylase/0.476
1blzACVIsopenicillin N synthase1.21.3.10.475
1bk0ACVIsopenicillin N synthase1.21.3.10.474
1uhoVDNcGMP-specific 3',5'-cyclic phosphodiesterase/0.474
3bbfGDPNucleoside diphosphate kinase B2.7.4.60.474
3hv3R49Mitogen-activated protein kinase 14/0.474
4b4w9L9Bifunctional protein FolD/0.474
1qiqACCIsopenicillin N synthase1.21.3.10.473
2bjsACVIsopenicillin N synthase1.21.3.10.473
2fmn4HF5,10-methylenetetrahydrofolate reductase1.5.1.200.473
3p9tTCLRepressor/0.473
2f98NGVAklanonic acid methyl ester cyclase AcmA5.5.1.230.470
3r6iJMSAldo-keto reductase family 1 member C3/0.470
4a6dSAMAcetylserotonin O-methyltransferase2.1.1.40.470
2fjm073Tyrosine-protein phosphatase non-receptor type 13.1.3.480.469
4a4o664Serine/threonine-protein kinase PLK12.7.11.210.469
1ygkRRCPyridoxal kinase2.7.1.350.468
2gsqGBIGlutathione S-transferase2.5.1.180.468
1fdwESTEstradiol 17-beta-dehydrogenase 11.1.1.620.467
2g7yMO9Cathepsin S3.4.22.270.467
4iaq2GM5-hydroxytryptamine receptor 1B/0.467
2jj2ADPATP synthase subunit alpha, mitochondrial/0.466
2jj2ADPATP synthase subunit beta, mitochondrial3.6.3.140.466
4bfxZVXPantothenate kinase2.7.1.330.466
1obnASVIsopenicillin N synthase1.21.3.10.465
1oynROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.465
1y5xE89Queuine tRNA-ribosyltransferase2.4.2.290.465
3ba6AN2Sarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.80.465
3zkyWT4Isopenicillin N synthase1.21.3.10.465
4do30LAFatty-acid amide hydrolase 13.5.1.990.465
1y6qTDI5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase3.2.2.90.464
2j3qTFLAcetylcholinesterase3.1.1.70.464
4dz5NAPAldo-keto reductase family 1 member C3/0.464
4iarERM5-hydroxytryptamine receptor 1B/0.464
4j531J4Serine/threonine-protein kinase PLK12.7.11.210.464
1dghNDPCatalase1.11.1.60.463
2jb4A14Isopenicillin N synthase1.21.3.10.463
2vbpVB1Isopenicillin N synthase1.21.3.10.463
2yatEEUEstrogen receptor/0.463
2zda32UProthrombin3.4.21.50.463
3g4iD71cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.463
3nu03TUDihydrofolate reductase1.5.1.30.463
4b117I1Glycylpeptide N-tetradecanoyltransferase/0.463
2fzjDH3Dihydrofolate reductase1.5.1.30.462
2jj2ANPATP synthase subunit beta, mitochondrial3.6.3.140.462
3nwlNDPCatalase1.11.1.60.462
4kp61S1cAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.462
3ey4352Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.461
4wo5324Serine/threonine-protein kinase B-raf2.7.11.10.461
1uhjCZBAequorin-2/0.460
1xoqROFcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.460
2re8GSUGlutamine--tRNA ligase6.1.1.180.460
4kbn25UDihydrofolate reductase1.5.1.30.460
1hb1OCVIsopenicillin N synthase1.21.3.10.459
1kmvLIIDihydrofolate reductase1.5.1.30.459
1mkdZARcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.459
5d5aCAUBeta-2 adrenergic receptor/0.459
1w06W05Isopenicillin N synthase1.21.3.10.458
2bu9HFVIsopenicillin N synthase1.21.3.10.458
3h4vDVPPteridine reductase 11.5.1.330.458
3q6kSRO43.2 kDa salivary protein/0.458
4a4l939Serine/threonine-protein kinase PLK12.7.11.210.458
4bfuZVUPantothenate kinase2.7.1.330.458
4fk3325Serine/threonine-protein kinase B-raf2.7.11.10.458
4li61XOTankyrase-12.4.2.300.458
1cl2PPGCystathionine beta-lyase MetC4.4.1.80.457
1fduESTEstradiol 17-beta-dehydrogenase 11.1.1.620.457
1odjGMPPurine nucleoside phosphorylase/0.457
1s3uTQDDihydrofolate reductase1.5.1.30.457
1yryMSGPurine nucleoside phosphorylase2.4.2.10.457
2iltNN1Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.457
2y6fM9FIsopenicillin N synthase1.21.3.10.457
3b8xG4MPutative pyridoxamine 5-phosphate-dependent dehydrase/0.457
4mrxCZHObelin/0.457
5kf2COAPredicted acetyltransferase/0.457
1e62FADFerredoxin--NADP reductase1.18.1.20.456
1q9mROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.456
2bf7HBIPteridine reductase 11.5.1.330.456
2i16LDTAldose reductase1.1.1.210.456
2xtbKRMAdenosine kinase, putative/0.456
2zhf49UProthrombin3.4.21.50.456
3d5qT30Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.456
3ptzUDXUDP-glucose 6-dehydrogenase1.1.1.220.456
1oytFSNProthrombin3.4.21.50.455
1thz326Bifunctional purine biosynthesis protein PURH2.1.2.30.455
3qpnPFKcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.455
1e2lTMCThymidine kinase/0.454
1kyyINI6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.454
1zq5E04Aldo-keto reductase family 1 member C3/0.454
3gieACPSensor histidine kinase DesK2.7.13.30.454
3prfFP3Serine/threonine-protein kinase B-raf2.7.11.10.454
4at4T6EBDNF/NT-3 growth factors receptor2.7.10.10.454
1ejbINJ6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.453
1tbbROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.453
2xk4OL2Serine/threonine-protein kinase Nek22.7.11.10.453
2yy2IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.453
3k3hBYEHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.453
4muw2F4cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.453
4y1bNAPAntE/0.453
1h42FADFerredoxin--NADP reductase1.18.1.20.452
1pd9CO4Dihydrofolate reductase1.5.1.30.452
1q0rAKTAclacinomycin methylesterase RdmC3.1.1.950.452
1ry0PG2Aldo-keto reductase family 1 member C3/0.452
1w19T4P6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.452
3wavDWVEctonucleotide pyrophosphatase/phosphodiesterase family member 23.1.4.390.452
4bbhYBNGlycylpeptide N-tetradecanoyltransferase/0.452
4ckrDI1Epithelial discoidin domain-containing receptor 12.7.10.10.452
4ddrMMVDihydrofolate reductase1.5.1.30.452
4oex5EOcGMP-specific 3',5'-cyclic phosphodiesterase/0.452
1upw444Oxysterols receptor LXR-beta/0.451
1v3q2DIPurine nucleoside phosphorylase2.4.2.10.451
2b01TUDPhospholipase A2, major isoenzyme3.1.1.40.451
2rbeZMGCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.451
3dgeADPSensor histidine kinase/0.451
3qeoLLTDeoxycytidine kinase2.7.1.740.451
3w5eNVWcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.451
4hf415HcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.451
4nbjD3YD-tyrosyl-tRNA(Tyr) deacylase/0.451
4phlPILPhosphodiesterase/0.451
4rh10TTSpore photoproduct lyase/0.451
1d3dBZTProthrombin3.4.21.50.450
1nbmADPATP synthase subunit beta, mitochondrial3.6.3.140.450
1qjfACSIsopenicillin N synthase1.21.3.10.450
2e9aB28Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.450
2fm5M99cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.450
2ouu35GcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.450
2qxwLDTAldose reductase1.1.1.210.450
2vteIK4UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.450
2xk730ESerine/threonine-protein kinase Nek22.7.11.10.450
3of3DIHPurine nucleoside phosphorylase DeoD-type 1/0.450
3qly55VUncharacterized protein/0.450
4a959MTGlycylpeptide N-tetradecanoyltransferase/0.450
4kd79DRDihydrofolate reductase1.5.1.30.450
4s1iPLPPyridoxal kinase, putative/0.450
1c4yIH3Prothrombin3.4.21.50.449
2e99B08Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.449
2rd2QSIGlutamine--tRNA ligase6.1.1.180.449
2vcmM11Isopenicillin N synthase1.21.3.10.449
3c1oNAPEugenol synthase/0.449
3iej599Cathepsin S3.4.22.270.449
3njoPYVAbscisic acid receptor PYR1/0.449
3ppkFNISerine/threonine-protein kinase B-raf2.7.11.10.449
3s41S41Glucokinase2.7.1.20.449
3uweVJJAldo-keto reductase family 1 member C3/0.449
4b12C23Glycylpeptide N-tetradecanoyltransferase/0.449
5h8tRTLRetinol-binding protein 1/0.449
3emlZMAAdenosine receptor A2a/0.449
1pd8CO4Dihydrofolate reductase1.5.1.30.448
1qv0CZHObelin/0.448
1uzwCDHIsopenicillin N synthase1.21.3.10.448
2vqqTFGHistone deacetylase 43.5.1.980.448
3aklADPSerine/threonine-protein kinase CtkA2.7.11.10.448
3lm4HPXCatechol 2,3-dioxygenase/0.448
3o9lLPNRenin3.4.23.150.448
3qiyQI1Botulinum neurotoxin type A3.4.24.690.448
3qppPFWcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.448
3ug8IMNAldo-keto reductase family 1 member C3/0.448
4dhyS41Glucokinase2.7.1.20.448
4feu537Aminoglycoside 3'-phosphotransferase AphA1-IAB/0.448
4gh6LUOHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.448
4jxxATPGlutamine--tRNA ligase6.1.1.180.448
4ky404JBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.448
5ab7MLCNonspecific lipid-transfer protein, putative/0.448
1dgfNDPCatalase1.11.1.60.447
1rftPXMPyridoxal kinase2.7.1.350.447
1xonPILcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.447
2bnpMSTReaction center protein L chain/0.447
3cth319Hepatocyte growth factor receptor2.7.10.10.447
3czr3CZCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.447
3dy8IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.447
3gcq1BUMitogen-activated protein kinase 14/0.447
3qe2FMNNADPH--cytochrome P450 reductase/0.447
3tfuPL8Adenosylmethionine-8-amino-7-oxononanoate aminotransferase2.6.1.620.447
3ziaADPATP synthase subunit beta, mitochondrial3.6.3.140.447
4fsa0V3Queuine tRNA-ribosyltransferase2.4.2.290.447
4g2yNI5cGMP-specific 3',5'-cyclic phosphodiesterase/0.447
4xbjIN5Alanine racemase, biosynthetic/0.447
1q0zAKAAclacinomycin methylesterase RdmC3.1.1.950.446
1vrqFONSubunit alpha of sarocosine oxidase/0.446
1wpgADPSarcoplasmic/endoplasmic reticulum calcium ATPase 13.6.3.80.446
1xdsDRAAclacinomycin 10-hydroxylase RdmB4.1.10.446
1xm1GAHProthrombin3.4.21.50.446
2f3815MAldo-keto reductase family 1 member C3/0.446
2qx7NAPEugenol synthase 11.1.1.3180.446
3dysIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.446
3ggs2FDPurine nucleoside phosphorylase2.4.2.10.446
3nrrD16Bifunctional dihydrofolate reductase-thymidylate synthase/0.446
3szfDCQSulfide-quinone reductase/0.446
4mryCEIObelin/0.446
1ohkCOPDihydrofolate reductase1.5.1.30.445
1y2e5DEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.445
2cn0F25Prothrombin3.4.21.50.445
2qw8NAPEugenol synthase 11.1.1.3180.445
2vbdV10Isopenicillin N synthase1.21.3.10.445
2w6cBM4Acetylcholinesterase3.1.1.70.445
3d3p20AcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.445
3jsiWTCHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.445
3nxrD2DDihydrofolate reductase1.5.1.30.445
3r58NPSAldo-keto reductase family 1 member C3/0.445
3tfjTHGDimethylsulfonioproprionate demethylase DmdA2.1.1.2690.445
4da6GA2Purine nucleoside phosphorylase DeoD-type2.4.2.10.445
4jbtASDCytochrome P450 monooxygenase/0.445
4x24TDI5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/0.445
1dr4HBIDihydrofolate reductase1.5.1.30.444
1fdsESTEstradiol 17-beta-dehydrogenase 11.1.1.620.444
1kk4ACOStreptogramin A acetyltransferase2.3.10.444
1lnmDTXBilin-binding protein/0.444
1s9dAFBCytohesin-2/0.444
1s9dAFBADP-ribosylation factor 1/0.444
1u1cBAUUridine phosphorylase2.4.2.30.444
1uwhBAXSerine/threonine-protein kinase B-raf2.7.11.10.444
1uymPU3Heat shock protein HSP 90-beta/0.444
1w5aGTPCell division protein FtsZ 1/0.444
2io6330Wee1-like protein kinase2.7.10.20.444
2q6hCXXNa(+):neurotransmitter symporter (Snf family)/0.444
3cqeP91Wee1-like protein kinase2.7.10.20.444
3dy85GPHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.444
3gyf51PDihydrofolate reductase1.5.1.30.444
3tl1JROPutative polyketide cyclase/0.444
4a86H35Major pollen allergen Bet v 1-A/0.444
4ajfF03cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.444
4bfsZVSPantothenate kinase2.7.1.330.444
4dpdDHFBifunctional dihydrofolate reductase-thymidylate synthase/0.444
1dlrMXADihydrofolate reductase1.5.1.30.443
1jf2CZHObelin/0.443
1sjwNGVNogalonic acid methyl ester cyclase/0.443
1w2cANPInositol-trisphosphate 3-kinase A2.7.1.1270.443
2b04CHOPhospholipase A2, major isoenzyme3.1.1.40.443
2cl5BIECatechol O-methyltransferase2.1.1.60.443
2o8h227cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.443
2rqfJH3Hemolymph juvenile hormone binding protein/0.443
2wo7ASVIsopenicillin N synthase1.21.3.10.443
2xnmWGZSerine/threonine-protein kinase Nek22.7.11.10.443
2zb8IMNProstaglandin reductase 21.3.1.480.443
3f3y4OABile salt sulfotransferase2.8.2.140.443
3g4lROFcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.443
3g58988cAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.443
3jq6DX1Pteridine reductase, putative/0.443
3pdtADPMyosin heavy chain kinase A2.7.11.70.443
3qwc98PProthrombin3.4.21.50.443
3zg6APRNAD-dependent protein deacetylase sirtuin-63.5.10.443
3zoiM2WIsopenicillin N synthase1.21.3.10.443
4c2jCOA3-ketoacyl-CoA thiolase, mitochondrial2.3.1.160.443
4c6zTLE3-oxoacyl-ACP synthase/0.443
4heu15JcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.443
4k6i9RARetinoic acid receptor RXR-alpha/0.443
4mubOAQSulfotransferase oxamniquine resistance protein/0.443
4nbn2J7Caspase-63.4.22.590.443
4u0k744Enoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.443
4ybnFADFlavin-nucleotide-binding protein/0.443
1fcy564Retinoic acid receptor gamma/0.442
2iviACWIsopenicillin N synthase1.21.3.10.442
2psjCEIRenilla-luciferin 2-monooxygenase1.13.12.50.442
3c0g3AMPeripheral plasma membrane protein CASK2.7.11.10.442
3eufBAUUridine phosphorylase 1/0.442
3iro2CYBifunctional dihydrofolate reductase-thymidylate synthase1.5.1.30.442
3zkuHCVIsopenicillin N synthase1.21.3.10.442
4g2wNI0cGMP-specific 3',5'-cyclic phosphodiesterase/0.442
4jlm1NNDeoxycytidine kinase2.7.1.740.442
3uzcT4EAdenosine receptor A2a/0.442
1aoeGW3Dihydrofolate reductase1.5.1.30.441
1odnAPVIsopenicillin N synthase1.21.3.10.441
1zidZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.441
2ovyPFJcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.441
2wd8VGFPteridine reductase/0.441
2wn6NDPADP-ribosyltransferase enzymatic component/0.441
2xk85R1Serine/threonine-protein kinase Nek22.7.11.10.441
2z7gEH9Adenosine deaminase3.5.4.40.441
3a1l2CCCytochrome P450/0.441
3bxxQUEDihydroflavonol 4-reductase1.1.1.2190.441
3eon341Glutaryl-CoA dehydrogenase/0.441
3oafOAGDihydrofolate reductase1.5.1.30.441
3u9y09LTankyrase-22.4.2.300.441
4ajdF04cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.441
5bt42LOBromodomain-containing protein 4/0.441
5epvACPBlue-light-activated histidine kinase2.7.13.30.441
1ef3FIDAldose reductase1.1.1.210.440
1f3eDPZQueuine tRNA-ribosyltransferase2.4.2.290.440
1fdtESTEstradiol 17-beta-dehydrogenase 11.1.1.620.440
1h35R01Squalene--hopene cyclase4.2.1.1290.440
1k4hAPQQueuine tRNA-ribosyltransferase2.4.2.290.440
1nzyBCA4-chlorobenzoyl coenzyme A dehalogenase3.8.1.70.440
1p33MTXPteridine reductase 11.5.1.330.440
2a9z26AAdenosine kinase2.7.1.200.440
3k4551PDihydrofolate reductase1.5.1.30.440
3l8sBFFMitogen-activated protein kinase 14/0.440
3ozd4CTS-methyl-5'-thioadenosine phosphorylase/0.440
4a322CDGlycylpeptide N-tetradecanoyltransferase/0.440
4ea2RWZDehydrosqualene synthase/0.440
4hshQEIQueuine tRNA-ribosyltransferase2.4.2.290.440
4jyzATPGlutamine--tRNA ligase6.1.1.180.440