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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1so2666cGMP-inhibited 3',5'-cyclic phosphodiesterase B3.1.4.17

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1so2666cGMP-inhibited 3',5'-cyclic phosphodiesterase B3.1.4.171.000
1sojIBMcGMP-inhibited 3',5'-cyclic phosphodiesterase B3.1.4.170.514
3v94WYQPhosphodiesterase/0.510
1mkdZARcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.481
3w5eNVWcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.467
1xomCIOcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.465
3o57ZG2cAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.465
1y2k7DEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.458
3o56ZG1cAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.457
1y2c3DEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.451
3g4lROFcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.442
1xoqROFcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.441