scPDB - Distribution of Binding site Similarity values of 1skm entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
1skm	SAH	Modification methylase HhaI	2.1.1.37

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
1skm	SAH	Modification methylase HhaI	2.1.1.37	1.000
2z6u	SAH	Modification methylase HhaI	2.1.1.37	0.648
7mht	SAH	Modification methylase HhaI	2.1.1.37	0.646
9mht	SAH	Modification methylase HhaI	2.1.1.37	0.644
5mht	SAH	Modification methylase HhaI	2.1.1.37	0.637
2zcj	SAH	Modification methylase HhaI	2.1.1.37	0.636
10mh	SAH	Modification methylase HhaI	2.1.1.37	0.622
1fjx	SAH	Modification methylase HhaI	2.1.1.37	0.614
8mht	SAH	Modification methylase HhaI	2.1.1.37	0.613
2uyh	SAH	Modification methylase HhaI	2.1.1.37	0.612
2i9k	SAH	Modification methylase HhaI	2.1.1.37	0.609
3mht	SAH	Modification methylase HhaI	2.1.1.37	0.605
2c7q	SAH	Modification methylase HhaI	2.1.1.37	0.598
1mht	SAH	Modification methylase HhaI	2.1.1.37	0.597
4mht	SAH	Modification methylase HhaI	2.1.1.37	0.571
2hmy	SAM	Modification methylase HhaI	2.1.1.37	0.547
3qv2	SAH	5-cytosine DNA methyltransferase	/	0.463
3pt6	SAH	DNA (cytosine-5)-methyltransferase 1	2.1.1.37	0.444