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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1sjwNGVNogalonic acid methyl ester cyclase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1sjwNGVNogalonic acid methyl ester cyclase/1.000
2f98NGVAklanonic acid methyl ester cyclase AcmA5.5.1.230.516
1so2666cGMP-inhibited 3',5'-cyclic phosphodiesterase B3.1.4.170.464
4ddl0JQcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.462
3pwhZMAAdenosine receptor A2a/0.462
1y2d4DEcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.457
1mkdZARcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.456
3w5eNVWcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.456
2gpjFADSiderophore-interacting protein/0.451
1sojIBMcGMP-inhibited 3',5'-cyclic phosphodiesterase B3.1.4.170.449
3a1l2CCCytochrome P450/0.449
1y60H4M5,6,7,8-tetrahydromethanopterin hydro-lyase4.2.1.1470.447
3u8hBHPPhospholipase A2, membrane associated/0.446
2ovvPFHcAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A3.1.4.170.444
4dbw511Aldo-keto reductase family 1 member C3/0.443
2c9zQUEAnthocyanidin 3-O-glucosyltransferase 22.4.1.1150.442
1tbbROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.441
3o56ZG1cAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.441
3rfmCFFAdenosine receptor A2a/0.441
3g70A5TRenin3.4.23.150.440