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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1s36CEIObelin

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1s36CEIObelin/1.000
1jf2CZHObelin/0.581
1jf0CZHObelin/0.572
1el4CTZObelin/0.570
1qv0CZHObelin/0.553
4n1fCZHObelin/0.549
1uhjCZBAequorin-2/0.548
1ej3CZHAequorin-2/0.539
4nqgCZHMitrocomin/0.538
1qv1CZHObelin/0.522
1uhhCZPAequorin-2/0.519
4mrxCZHObelin/0.517
4b144XBGlycylpeptide N-tetradecanoyltransferase/0.458
2yneYNEGlycylpeptide N-tetradecanoyltransferase/0.453
1c7oPPGHemolysin/0.452
3h3t16HCollagen type IV alpha-3-binding protein/0.451
4b12C23Glycylpeptide N-tetradecanoyltransferase/0.449
1ry0PG2Aldo-keto reductase family 1 member C3/0.447
1tbbROLcAMP-specific 3',5'-cyclic phosphodiesterase 4D3.1.4.530.447
1zg32HIIsoflavone 4'-O-methyltransferase/0.446
3h3qH13Collagen type IV alpha-3-binding protein/0.445
3up3XCAaceDAF-12/0.441
4bbhYBNGlycylpeptide N-tetradecanoyltransferase/0.441
4dbw511Aldo-keto reductase family 1 member C3/0.440