Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1s19MC9Vitamin D3 receptor

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1s19MC9Vitamin D3 receptor/1.000
1db1VDXVitamin D3 receptor/0.722
3w0aDS5Vitamin D3 receptor/0.715
2hamC33Vitamin D3 receptor/0.704
2harOCCVitamin D3 receptor/0.697
1ie9VDXVitamin D3 receptor/0.694
3kpzZNEVitamin D3 receptor/0.694
1txiTX5Vitamin D3 receptor/0.677
3w0yDS4Vitamin D3 receptor/0.674
2hb8MVDVitamin D3 receptor/0.668
2zl9VDAVitamin D3 receptor/0.668
3vrvYSDVitamin D3 receptor/0.662
2zlcVDXVitamin D3 receptor/0.660
1rkhVD2Vitamin D3 receptor/0.659
3w0jT08Vitamin D3 receptor/0.655
1rk3VDXVitamin D3 receptor/0.654
3vrwYS5Vitamin D3 receptor/0.653
3a783EVVitamin D3 receptor/0.650
3vt65YIVitamin D3 receptor/0.650
4ia7BIVVitamin D3 receptor A/0.650
2o4rVD5Vitamin D3 receptor/0.646
3vt5YI2Vitamin D3 receptor/0.644
4g1z0VPVitamin D3 receptor A/0.643
3vt3VDXVitamin D3 receptor/0.642
4fhi0S4Vitamin D3 receptor A/0.642
4g20484Vitamin D3 receptor A/0.642
2hc4VDXVitamin D3 receptor A/0.641
3vtbTKAVitamin D3 receptor/0.641
1rkgVD1Vitamin D3 receptor/0.639
3vrtYS2Vitamin D3 receptor/0.637
4ia3BIVVitamin D3 receptor A/0.635
3w0c6DSVitamin D3 receptor/0.634
4g1d0VKVitamin D3 receptor A/0.634
2hcdBIVVitamin D3 receptor A/0.632
3dr1C5DVitamin D3 receptor A/0.632
3w0hW12Vitamin D3 receptor/0.631
4g2h0VQVitamin D3 receptor A/0.631
3vruYS3Vitamin D3 receptor/0.630
3vt9YI4Vitamin D3 receptor/0.629
4g1y0VOVitamin D3 receptor A/0.627
4ia2BIVVitamin D3 receptor A/0.627
2o4jVD4Vitamin D3 receptor/0.626
4rupH97Vitamin D3 receptor A/0.626
4ruoBIVVitamin D3 receptor A/0.625
1s0zEB1Vitamin D3 receptor/0.623
4ia1BIVVitamin D3 receptor A/0.623
4iteTEYVitamin D3 receptor/0.623
2zlaVDBVitamin D3 receptor/0.622
4g210VPVitamin D3 receptor A/0.622
3vt8YI3Vitamin D3 receptor/0.619
3vtcTK3Vitamin D3 receptor/0.618
3w5rLOAVitamin D3 receptor/0.618
3vt7VDXVitamin D3 receptor/0.617
2hb7O1CVitamin D3 receptor/0.615
3vtdTKDVitamin D3 receptor/0.615
4itfTFYVitamin D3 receptor/0.615
4rujVDXVitamin D3 receptor A/0.615
4fhh0U3Vitamin D3 receptor A/0.613
3w0gW07Vitamin D3 receptor/0.607
2hasC3OVitamin D3 receptor/0.606
3vt45YIVitamin D3 receptor/0.606
2hbhXE4Vitamin D3 receptor A/0.602
3w5p4OAVitamin D3 receptor/0.596
3w5tLHPVitamin D3 receptor/0.594
3w0iO11Vitamin D3 receptor/0.590
4q0a4OAVitamin D3 receptor A/0.586
1rjkVDZVitamin D3 receptor/0.585
3m7rVDXVitamin D3 receptor/0.578
3w5q3KLVitamin D3 receptor/0.575
1ie8KH1Vitamin D3 receptor/0.547
4g2i0VQVitamin D3 receptor/0.485
3p3zP3ZPutative cytochrome P450/0.442
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.441
3czr3CZCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.440