scPDB - Distribution of Binding site Similarity values of 1rvv entry / Site 25

Distribution of Binding site similarity measured by Shaper

You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
1rvv	INI	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
1rvv	INI	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	1.000
1zis	INI	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.517
1nqv	LMZ	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.503
1nqu	RDL	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.474
4kq6	DLZ	6,7-dimethyl-8-ribityllumazine synthase	/	0.453
2c9d	PHR	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.452
1kyx	CRM	6,7-dimethyl-8-ribityllumazine synthase	2.5.1.78	0.448