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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1qv1CZHObelin

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1qv1CZHObelin/1.000
1qv0CZHObelin/0.796
4n1fCZHObelin/0.650
1ej3CZHAequorin-2/0.630
1jf0CZHObelin/0.630
1uhhCZPAequorin-2/0.630
4nqgCZHMitrocomin/0.629
1uhjCZBAequorin-2/0.613
1el4CTZObelin/0.604
1sl9CZHObelin/0.600
1jf2CZHObelin/0.595
4mrxCZHObelin/0.566
1s36CEIObelin/0.537
1q0zAKAAclacinomycin methylesterase RdmC3.1.1.950.497
1q0rAKTAclacinomycin methylesterase RdmC3.1.1.950.489
1o6qR17Squalene--hopene cyclase4.2.1.1290.485
4b13X25Glycylpeptide N-tetradecanoyltransferase/0.484
1icqOPD12-oxophytodienoate reductase 11.3.1.420.465
4b117I1Glycylpeptide N-tetradecanoyltransferase/0.464
2yneYNEGlycylpeptide N-tetradecanoyltransferase/0.462
4b144XBGlycylpeptide N-tetradecanoyltransferase/0.461
1zg32HIIsoflavone 4'-O-methyltransferase/0.458
4bbhYBNGlycylpeptide N-tetradecanoyltransferase/0.457
4b12C23Glycylpeptide N-tetradecanoyltransferase/0.453
3l6jZ90Alr2278 protein/0.451
4l5b1UXDeoxycytidine kinase2.7.1.740.451
4j6cSTRCytochrome P450 monooxygenase/0.449
4jbtASDCytochrome P450 monooxygenase/0.449
1rpwDIDHTH-type transcriptional regulator QacR/0.447
4a959MTGlycylpeptide N-tetradecanoyltransferase/0.447
2e9aB28Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)2.5.1.310.445
2ntvP1HEnoyl-[acyl-carrier-protein] reductase [NADH]/0.445
1upw444Oxysterols receptor LXR-beta/0.443
3h3r14HCollagen type IV alpha-3-binding protein/0.443
1pqc444Oxysterols receptor LXR-beta/0.442
3tdaPN0Cytochrome P450 2D6/0.442
1hrvSDZGenome polyprotein/0.441
4iae1DXAlr2278 protein/0.441
2aclL05Oxysterols receptor LXR-alpha/0.440
4uy6SAHHistidine N-alpha-methyltransferase/0.440