scPDB - Distribution of Binding site Similarity values of 1qcw entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
1qcw	FNS	Cytochrome b2, mitochondrial	1.1.2.3

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
1qcw	FNS	Cytochrome b2, mitochondrial	1.1.2.3	1.000
1szg	FNS	Cytochrome b2, mitochondrial	1.1.2.3	0.554
1kbi	FMN	Cytochrome b2, mitochondrial	1.1.2.3	0.552
1kbj	FMN	Cytochrome b2, mitochondrial	1.1.2.3	0.524
1szf	FMN	Cytochrome b2, mitochondrial	1.1.2.3	0.523
3giy	FMN	(S)-mandelate dehydrogenase	1.1.99.31	0.498
1fcb	FMN	Cytochrome b2, mitochondrial	1.1.2.3	0.492
2oz0	FMN	Cytochrome b2, mitochondrial	1.1.2.3	0.476
2j6x	FMN	Lactate oxidase	/	0.462
2nli	FMN	Lactate oxidase	/	0.460
1gox	FMN	Peroxisomal (S)-2-hydroxy-acid oxidase	1.1.3.15	0.440