sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1q0q | NDP | 1-deoxy-D-xylulose 5-phosphate reductoisomerase | 1.1.1.267 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 1q0q | NDP | 1-deoxy-D-xylulose 5-phosphate reductoisomerase | 1.1.1.267 | 1.000 | |
| 2jd1 | NDP | 1-deoxy-D-xylulose 5-phosphate reductoisomerase | / | 0.569 | |
| 2jd0 | NDP | 1-deoxy-D-xylulose 5-phosphate reductoisomerase | / | 0.556 | |
| 4jbi | NDP | Alcohol dehydrogenase (Zinc) | / | 0.473 | |
| 4wji | NAP | Putative cyclohexadienyl dehydrogenase and ADH prephenate dehydrogenase | / | 0.469 | |
| 4dpl | NAP | Malonyl-CoA reductase | 1.2.1.75 | 0.455 | |
| 3ggo | NAI | Prephenate dehydrogenase | / | 0.452 | |
| 2oxi | NAD | Alcohol dehydrogenase E chain | 1.1.1.1 | 0.451 | |
| 1j3j | NDP | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.449 | |
| 2vna | NAP | Prostaglandin reductase 2 | 1.3.1.48 | 0.448 | |
| 3abi | NAD | Uncharacterized protein | / | 0.448 | |
| 2c0c | NAP | Prostaglandin reductase 3 | 1 | 0.447 | |
| 2g5c | NAD | Prephenate dehydrogenase | / | 0.444 | |
| 2w3b | NDP | Dihydrofolate reductase | 1.5.1.3 | 0.443 | |
| 2nua | COA | Succinate--CoA ligase [ADP-forming] subunit alpha | 6.2.1.5 | 0.442 | |
| 3ox4 | NAD | Alcohol dehydrogenase 2 | 1.1.1.1 | 0.442 | |
| 2f1k | NAP | Prephenate dehydrogenase | / | 0.440 |