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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1pnoNAPNAD(P) transhydrogenase subunit beta1.6.1.2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1pnoNAPNAD(P) transhydrogenase subunit beta1.6.1.21.000
1u31NDPNAD(P) transhydrogenase, mitochondrial1.6.1.20.606
1d4oNAPNAD(P) transhydrogenase, mitochondrial/0.585
1djlNAPNAD(P) transhydrogenase, mitochondrial1.6.1.20.577
1pt9TAPNAD(P) transhydrogenase, mitochondrial1.6.1.20.571
2fr8NAPNAD(P) transhydrogenase subunit beta1.6.1.20.568
2fsvNAPNAD(P) transhydrogenase subunit beta1.6.1.20.561
1nm5NAPNAD(P) transhydrogenase subunit beta1.6.1.20.546
1ptjNAPNAD(P) transhydrogenase subunit beta1.6.1.20.546
1hzzNAPNAD(P) transhydrogenase subunit beta1.6.1.20.535
4j1tNAPNAD(P) transhydrogenase subunit beta/0.535
4j16NAPNAD(P) transhydrogenase subunit beta/0.527
1pnqNDPNAD(P) transhydrogenase subunit beta1.6.1.20.450