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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1oyaFMNNADPH dehydrogenase 11.6.99.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1oyaFMNNADPH dehydrogenase 11.6.99.11.000
1oycFMNNADPH dehydrogenase 11.6.99.10.811
1bwkFMNNADPH dehydrogenase 11.6.99.10.724
4h6kFMNNADPH dehydrogenase 11.6.99.10.670
4rnxFMNNADPH dehydrogenase 11.6.99.10.598
4tmbFMNOld yellow enzyme/0.585
4k7yFMNNADPH dehydrogenase 11.6.99.10.563
1vyrFMNPentaerythritol tetranitrate reductase/0.562
2abbFMNPentaerythritol tetranitrate reductase/0.552
1bwlFMNNADPH dehydrogenase 11.6.99.10.551
3p82FMNPentaerythritol tetranitrate reductase/0.546
1h50FMNPentaerythritol tetranitrate reductase/0.545
4rnvFMNNADPH dehydrogenase 11.6.99.10.544
3p74FMNPentaerythritol tetranitrate reductase/0.538
3p8iFMNPentaerythritol tetranitrate reductase/0.538
3hgoFMN12-oxophytodienoate reductase 31.3.1.420.536
3p67FMNPentaerythritol tetranitrate reductase/0.532
3p62FMNPentaerythritol tetranitrate reductase/0.531
4tmcFMNOld yellow enzyme/0.530
3f03FMNPentaerythritol tetranitrate reductase/0.525
3hgrFMN12-oxophytodienoate reductase 11.3.1.420.525
1h63FMNPentaerythritol tetranitrate reductase/0.521
2q3rFMN12-oxophytodienoate reductase 11.3.1.420.521
1h51FMNPentaerythritol tetranitrate reductase/0.516
1icpFMN12-oxophytodienoate reductase 11.3.1.420.516
1vjiFMN12-oxophytodienoate reductase 11.3.1.420.516
1q45FMN12-oxophytodienoate reductase 31.3.1.420.513
4rnuFMNNADPH dehydrogenase 11.6.99.10.513
1icsFMN12-oxophytodienoate reductase 11.3.1.420.510
3hgsFMN12-oxophytodienoate reductase 31.3.1.420.509
2q3oFMN12-oxophytodienoate reductase 31.3.1.420.501
3atzFMNProstaglandin F2a synthase/0.500
4rnwFMNNADPH dehydrogenase 11.6.99.10.500
1icqFMN12-oxophytodienoate reductase 11.3.1.420.499
2hs8FMN12-oxophytodienoate reductase 31.3.1.420.499
4e2dFMNDehydrogenase/0.497
3p84FMNPentaerythritol tetranitrate reductase/0.496
1k02FMNNADPH dehydrogenase 11.6.99.10.492
1h66FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.487
3gkaFMNN-ethylmaleimide reductase/0.487
4jicFMNGTN Reductase/0.485
5a4kFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.484
4df2FMNNADPH dehydrogenase/0.482
1d4aFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.480
4e2bFMNDehydrogenase/0.475
3atyFMNProstaglandin F2a synthase/0.471
1kbqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.470
3l5lFMNXenobiotic reductase/0.469
3p8jFMNPentaerythritol tetranitrate reductase/0.467
4m5pFMNNADPH dehydrogenase/0.467
3tjlFMNNADPH dehydrogenase/0.466
4qaiFMNNADPH dehydrogenase/0.466
1qbgFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.465
1dxqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.463
1h69FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.461
5eaiFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.455
2hs6FMN12-oxophytodienoate reductase 31.3.1.420.453
3giyFMN(S)-mandelate dehydrogenase1.1.99.310.452
1bwsNDPGDP-L-fucose synthase/0.451
4uthFMNXenobiotic reductase/0.447
5ebuFMNLactate oxidase/0.447
4a3uFMNNADH:flavin oxidoreductase/NADH oxidase/0.446
4xcvNDPProbable hydroxyacid dehydrogenase protein/0.446
1bil0IURenin3.4.23.150.445
1m13HYFNuclear receptor subfamily 1 group I member 2/0.443
1dxoFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.442
4ocvANPAminoglycoside phosphotransferase/0.442
2ev9NAPShikimate dehydrogenase (NADP(+))/0.441
2gouFMNNADH:flavin oxidoreductase Sye1/0.441
3qj4FADRenalase/0.441
2rghFADAlpha-Glycerophosphate Oxidase/0.440
4b5nFMNNAD(P)H:flavin oxidoreductase Sye4/0.440