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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1nm6L86Prothrombin3.4.21.5

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1nm6L86Prothrombin3.4.21.51.000
1z71L17Prothrombin3.4.21.50.740
2r2mI50Prothrombin3.4.21.50.723
1oytFSNProthrombin3.4.21.50.715
1c4uIH1Prothrombin3.4.21.50.712
3c1kT15Prothrombin3.4.21.50.710
1yplRA8Prothrombin3.4.21.50.692
1d3pBT3Prothrombin3.4.21.50.689
1ta6177Prothrombin3.4.21.50.662
3qwc98PProthrombin3.4.21.50.659
2anmCDOProthrombin3.4.21.50.654
1k22MELProthrombin3.4.21.50.649
1t4v14AProthrombin3.4.21.50.648
4ax9N5NProthrombin3.4.21.50.644
1ypeUIPProthrombin3.4.21.50.643
1ypjUIBProthrombin3.4.21.50.642
2zhf49UProthrombin3.4.21.50.642
1mu6CDAProthrombin3.4.21.50.637
1d3dBZTProthrombin3.4.21.50.633
1xm1GAHProthrombin3.4.21.50.633
2cn0F25Prothrombin3.4.21.50.633
2cf8ESHProthrombin3.4.21.50.632
1ypmRA4Prothrombin3.4.21.50.631
2jh5895Prothrombin3.4.21.50.631
1t4u81AProthrombin3.4.21.50.628
2uuk897Prothrombin3.4.21.50.623
1ypgUIRProthrombin3.4.21.50.622
2bdyUNBProthrombin3.4.21.50.618
2jh6894Prothrombin3.4.21.50.617
2zhq27UProthrombin3.4.21.50.617
2zhw12UProthrombin3.4.21.50.612
2cf9348Prothrombin3.4.21.50.609
1d9i00PProthrombin3.4.21.50.606
2zda32UProthrombin3.4.21.50.604
2pksG44Prothrombin3.4.21.50.601
4lxb7R9Prothrombin3.4.21.50.601
1jwtBLIProthrombin3.4.21.50.597
2v3oI26Prothrombin3.4.21.50.595
2zfr46UProthrombin3.4.21.50.595
4n3l2FNProthrombin3.4.21.50.594
2v3hI25Prothrombin3.4.21.50.593
1d4pBPPProthrombin3.4.21.50.592
1zrb062Prothrombin3.4.21.50.588
1mueCDDProthrombin3.4.21.50.583
2zfq45UProthrombin3.4.21.50.583
4ayy9MXProthrombin3.4.21.50.581
4bahMELProthrombin3.4.21.50.580
1c4yIH3Prothrombin3.4.21.50.579
2zi224UProthrombin3.4.21.50.579
1sb1165Prothrombin3.4.21.50.575
1d6w00RProthrombin3.4.21.50.573
2jh0701Prothrombin3.4.21.50.572
2zhe13UProthrombin3.4.21.50.568
2zc922UProthrombin3.4.21.50.565
3hatGLY_VAL_ARG_RNGProthrombin3.4.21.50.564
1zgv501Prothrombin3.4.21.50.561
2zfp19UProthrombin3.4.21.50.560
2bvs2CEProthrombin3.4.21.50.559
2zdv37UProthrombin3.4.21.50.558
1ypkCCRProthrombin3.4.21.50.556
2a2xNA9Prothrombin3.4.21.50.549
2zg050UProthrombin3.4.21.50.548
1zgi382Prothrombin3.4.21.50.547
3p1799PProthrombin3.4.21.50.547
2zgx29UProthrombin3.4.21.50.546
2gdeSN3Prothrombin3.4.21.50.545
1k21IGNProthrombin3.4.21.50.540
1nzq162Prothrombin3.4.21.50.539
2znk31UProthrombin3.4.21.50.537
4e7r0NWProthrombin3.4.21.50.535
1c4vIH2Prothrombin3.4.21.50.533
3c27DKKProthrombin3.4.21.50.533
2zff53UProthrombin3.4.21.50.531
3biu10UProthrombin3.4.21.50.530
3eq02TSProthrombin3.4.21.50.527
1afeALZProthrombin3.4.21.50.524
4baoMVFProthrombin3.4.21.50.524
2zgb21UProthrombin3.4.21.50.521
4ayv9MQProthrombin3.4.21.50.520
2uuj896Prothrombin3.4.21.50.519
3qto10PProthrombin3.4.21.50.519
4az29MUProthrombin3.4.21.50.519
3qtv06PProthrombin3.4.21.50.518
4bamMM9Prothrombin3.4.21.50.518
5cmx0G6Prothrombin3.4.21.50.516
1w7gMIUProthrombin3.4.21.50.515
1ae8AZLProthrombin3.4.21.50.514
1riwOSCProthrombin3.4.21.50.513
1vzqSHYProthrombin3.4.21.50.512
7kmeACE_0BN_CHG_PRRProthrombin3.4.21.50.512
3utu1TSProthrombin3.4.21.50.511
1mu8CDBProthrombin3.4.21.50.507
1a4wQWEProthrombin3.4.21.50.503
1gj5130Prothrombin3.4.21.50.502
4hfp15UProthrombin3.4.21.50.501
1ktsC24Prothrombin3.4.21.50.491
2zf051UProthrombin3.4.21.50.490
3dhk23UProthrombin3.4.21.50.490
1ghv120Prothrombin3.4.21.50.488
2bxtC2DProthrombin3.4.21.50.487
4bakM67Prothrombin3.4.21.50.486
4baqM4ZProthrombin3.4.21.50.485
3dux64UProthrombin3.4.21.50.484
3qdzPRO_ALA_PRO_ARGProthrombin3.4.21.50.484
1o2g696Prothrombin3.4.21.50.479
1sl3170Prothrombin3.4.21.50.478
3egkM18Prothrombin3.4.21.50.472
2ziq26UProthrombin3.4.21.50.471
4banM6SProthrombin3.4.21.50.468
2nr4FMNConserved protein/0.459
1uvsI11Prothrombin3.4.21.50.458
4j4nD44Peptidylprolyl isomerase/0.450
1o0d163Prothrombin3.4.21.50.448
1q0zAKAAclacinomycin methylesterase RdmC3.1.1.950.448
1umaIN2Prothrombin3.4.21.50.448
3vqsJT1Genome polyprotein/0.448
3adaNADSubunit alpha of sarocosine oxidase/0.447
3q43D66M1 family aminopeptidase3.4.110.447
1ta2176Prothrombin3.4.21.50.445
1nsgRADPeptidyl-prolyl cis-trans isomerase FKBP1A5.2.1.80.441
1nsgRADSerine/threonine-protein kinase mTOR2.7.11.10.441
2gevCOKPantothenate kinase2.7.1.330.441
4x28FDAAcyl-CoA dehydrogenase FadE26/0.441
4x28FDAAcyl-CoA dehydrogenase FadE27/0.441
3biv11UProthrombin3.4.21.50.440