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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1nf7RVPInosine-5'-monophosphate dehydrogenase 2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1nf7RVPInosine-5'-monophosphate dehydrogenase 2/1.000
2cu0XMPInosine-5'-monophosphate dehydrogenase/0.579
1me7RVPInosine-5'-monophosphate dehydrogenase/0.562
4z875GPInosine-5'-monophosphate dehydrogenase/0.537
1me8RVPInosine-5'-monophosphate dehydrogenase/0.500
1meiXMPInosine-5'-monophosphate dehydrogenase/0.499
4qq3XMPInosine-5'-monophosphate dehydrogenase/0.491
4z0g5GPInosine-5'-monophosphate dehydrogenase/0.490
2a1y5GPGMP reductase/0.474
2a7r5GPGMP reductase 2/0.474
4e5yNDPGDP-L-fucose synthase1.1.1.2710.443
2cmjNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.442