Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1ndyFR3Adenosine deaminase3.5.4.4

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1ndyFR3Adenosine deaminase3.5.4.41.000
1o5rFR9Adenosine deaminase3.5.4.40.683
1wxyFRKAdenosine deaminase3.5.4.40.679
1ndzFR5Adenosine deaminase3.5.4.40.653
1qxlFR8Adenosine deaminase3.5.4.40.637
1v7aFRCAdenosine deaminase3.5.4.40.634
1umlFR4Adenosine deaminase3.5.4.40.619
2z7gEH9Adenosine deaminase3.5.4.40.583
1v79FR7Adenosine deaminase3.5.4.40.533
4iarERM5-hydroxytryptamine receptor 1B/0.444