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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1ndhFADNADH-cytochrome b5 reductase 31.6.2.2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1ndhFADNADH-cytochrome b5 reductase 31.6.2.21.000
1i7pFADNADH-cytochrome b5 reductase 31.6.2.20.611
1umkFADNADH-cytochrome b5 reductase 31.6.2.20.563
2eixFADNADH-cytochrome b5 reductase/0.532
1qx4FADNADH-cytochrome b5 reductase 31.6.2.20.523
1ib0FADNADH-cytochrome b5 reductase 31.6.2.20.517
2cndFADNitrate reductase [NADH]1.7.1.10.510
1cnfFADNitrate reductase [NADH]1.7.1.10.491
1w6hTITPlasmepsin-23.4.23.390.456
1d4aFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.448
2bf4FADNADPH--cytochrome P450 reductase/0.448
4ambDUDPutative glycosyl transferase/0.445
1xe55FEPlasmepsin-23.4.23.390.444
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.442
4lcjNADC-terminal-binding protein 2/0.442
1cneFADNitrate reductase [NADH]1.7.1.10.441
4uwmFMN3,6-diketocamphane 1,6 monooxygenase1.14.130.440