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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1n1dC2GGlycerol-3-phosphate cytidylyltransferase2.7.7.39

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1n1dC2GGlycerol-3-phosphate cytidylyltransferase2.7.7.391.000
1cozCTPGlycerol-3-phosphate cytidylyltransferase2.7.7.390.503
2qtrNXXProbable nicotinate-nucleotide adenylyltransferase/0.499
1nuqNXXNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.472
4mvcCDCCholine-phosphate cytidylyltransferase A/0.464
1nuuNADNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.463
4wsoNADProbable nicotinate-nucleotide adenylyltransferase/0.453
1k4mNADNicotinate-nucleotide adenylyltransferase2.7.7.180.450