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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1n06ADPRiboflavin kinase2.7.1.26

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1n06ADPRiboflavin kinase2.7.1.261.000
1n08ADPRiboflavin kinase2.7.1.260.580
1p4mADPRiboflavin kinase2.7.1.260.540
1c6yMK1Protease/0.468
4hdgGTPGenome polyprotein2.7.7.480.466
1hb3SCVIsopenicillin N synthase1.21.3.10.453
4gyy12VUDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit/0.452
4a6cQG9Gag-Pol polyprotein3.4.23.160.447
5dp2NAPCurF/0.447
5a88ADPRiboflavin biosynthesis protein RibF2.7.1.260.445
1kzkJE2Gag-Pol polyprotein3.4.23.160.444
1bwaXV6Gag-Pol polyprotein3.4.23.160.442
3ntdCOAFAD-dependent pyridine nucleotide-disulphide oxidoreductase/0.441