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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1mxtFAECholesterol oxidase1.1.3.6

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1mxtFAECholesterol oxidase1.1.3.61.000
1n4uFAECholesterol oxidase1.1.3.60.892
4xwrFADCholesterol oxidase1.1.3.60.775
1ijhFADCholesterol oxidase1.1.3.60.764
4xxgFADCholesterol oxidase1.1.3.60.762
4u2lSFDCholesterol oxidase1.1.3.60.759
1n4vFADCholesterol oxidase1.1.3.60.699
4rekFADCholesterol oxidase1.1.3.60.689
3gyjFADCholesterol oxidase1.1.3.60.686
4u2sFDACholesterol oxidase1.1.3.60.683
1cc2FADCholesterol oxidase1.1.3.60.681
3gyiFADCholesterol oxidase1.1.3.60.670
1b4vFADCholesterol oxidase1.1.3.60.665
1b8sFADCholesterol oxidase1.1.3.60.656
1cboFADCholesterol oxidase1.1.3.60.607
3cnjFADCholesterol oxidase1.1.3.60.561
3coxFADCholesterol oxidase1.1.3.60.554
4qi5FADCellobiose dehydrogenase/0.503
4qi4FADCellobiose dehydrogenase/0.499
4qi7FADCellobiose dehydrogenase/0.498
5eb5FAD(R)-mandelonitrile lyase 14.1.2.100.440