sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1lke | DOG | Bilin-binding protein |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 1lke | DOG | Bilin-binding protein | / | 1.000 | |
| 1lnm | DTX | Bilin-binding protein | / | 0.593 | |
| 4bb3 | KKA | Isopenicillin N synthase | 1.21.3.1 | 0.489 | |
| 4a31 | 2CB | Glycylpeptide N-tetradecanoyltransferase | / | 0.477 | |
| 3h2s | NDP | Putative NADH-flavin reductase | / | 0.473 | |
| 3tfu | PL8 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase | 2.6.1.62 | 0.454 | |
| 4uug | PXG | Branched-chain amino acid aminotransferase, putative | / | 0.452 | |
| 1zq5 | E04 | Aldo-keto reductase family 1 member C3 | / | 0.451 | |
| 3hl0 | NAD | Maleylacetate reductase | / | 0.450 | |
| 1ry0 | PG2 | Aldo-keto reductase family 1 member C3 | / | 0.448 | |
| 2wzy | SQX | Soluble acetylcholine receptor | / | 0.447 | |
| 4b13 | X25 | Glycylpeptide N-tetradecanoyltransferase | / | 0.446 | |
| 4b12 | C23 | Glycylpeptide N-tetradecanoyltransferase | / | 0.445 | |
| 3uzw | NAP | 3-oxo-5-beta-steroid 4-dehydrogenase | / | 0.443 | |
| 3eks | CY9 | Actin-5C | / | 0.442 | |
| 2wu4 | HBP | Acetylcholinesterase | 3.1.1.7 | 0.441 | |
| 4a32 | 2CD | Glycylpeptide N-tetradecanoyltransferase | / | 0.441 | |
| 1m9n | AMZ | Bifunctional purine biosynthesis protein PURH | 2.1.2.3 | 0.440 |