Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1ld8U49Protein farnesyltransferase subunit beta2.5.1.58

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1ld8U49Protein farnesyltransferase subunit beta2.5.1.581.000
1s63778Protein farnesyltransferase subunit beta2.5.1.580.841
1ld7U66Protein farnesyltransferase subunit beta2.5.1.580.834
1jcq739Protein farnesyltransferase subunit beta2.5.1.580.803
1sa4JANProtein farnesyltransferase subunit beta2.5.1.580.697
1mzcBNEProtein farnesyltransferase subunit beta2.5.1.580.671
3e33ED7Protein farnesyltransferase subunit beta2.5.1.580.637
1o1s1NHProtein farnesyltransferase subunit beta2.5.1.580.633
1n95FTHProtein farnesyltransferase subunit beta2.5.1.580.626
1sa5BMVProtein farnesyltransferase subunit beta2.5.1.580.612
2h6iCYS_VAL_LEU_SER_GERProtein farnesyltransferase subunit beta2.5.1.580.602
3e30ED4Protein farnesyltransferase subunit beta2.5.1.580.594
2r2lPB9Protein farnesyltransferase subunit beta2.5.1.580.575
3ksqZ96Protein farnesyltransferase subunit beta2.5.1.580.565
1nl4HFPProtein farnesyltransferase subunit beta2.5.1.580.523
3sfy3FYUncharacterized protein/0.521
3q7fED2Uncharacterized protein/0.517
3pz43PZProtein farnesyltransferase subunit beta2.5.1.580.500
3eu5GBOProtein farnesyltransferase subunit beta2.5.1.580.495
4gtr7TRProtein farnesyltransferase subunit beta2.5.1.580.489
3pz23PZGeranylgeranyl transferase type-2 subunit beta2.5.1.600.472
2iejS48Protein farnesyltransferase subunit beta2.5.1.580.470
4gto7TOProtein farnesyltransferase subunit beta2.5.1.580.462
1n4sCYS_VAL_ILE_LEU_GERGeranylgeranyl transferase type-1 subunit beta2.5.1.590.455
3e32ED2Protein farnesyltransferase subunit beta2.5.1.580.455
1s64778Geranylgeranyl transferase type-1 subunit beta2.5.1.590.447
3e34ED1Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha/0.445
3e34ED1Protein farnesyltransferase subunit beta2.5.1.580.445