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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1kyyINI6,7-dimethyl-8-ribityllumazine synthase2.5.1.78

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1kyyINI6,7-dimethyl-8-ribityllumazine synthase2.5.1.781.000
1kyxCRM6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.649
2a59LMZ6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.601
2a57CRM6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.599
1ejbINJ6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.564
1kyvRBF6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.546
1nquRDL6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.537
4kq6DLZ6,7-dimethyl-8-ribityllumazine synthase/0.516
1w19T5P6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.504
1nqvLMZ6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.487
1nqw5YL6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.481
2a58RBF6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.481
1rvvINI6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.468
2vi5Y196,7-dimethyl-8-ribityllumazine synthase2.5.1.780.460
1w19T4P6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.459
4e2yJHZMethyltransferase/0.458
1w19T1P6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.455
2c94TSF6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.455
4e2zJHZMethyltransferase/0.454
1w29TS06,7-dimethyl-8-ribityllumazine synthase2.5.1.780.453
1nqxRLP6,7-dimethyl-8-ribityllumazine synthase2.5.1.780.443