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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1kwcBPYBiphenyl-2,3-diol 1,2-dioxygenase1.13.11.39

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1kwcBPYBiphenyl-2,3-diol 1,2-dioxygenase1.13.11.391.000
1kw6BPYBiphenyl-2,3-diol 1,2-dioxygenase1.13.11.390.666
1kw9BPYBiphenyl-2,3-diol 1,2-dioxygenase1.13.11.390.664
1eirBPYBiphenyl-2,3-diol 1,2-dioxygenase1.13.11.390.616
1kw8BPYBiphenyl-2,3-diol 1,2-dioxygenase1.13.11.390.603
1lgtBP3Biphenyl-2,3-diol 1,2-dioxygenase1.13.11.390.466
1lkdBP6Biphenyl-2,3-diol 1,2-dioxygenase1.13.11.390.449
2po7CHDFerrochelatase, mitochondrial4.99.1.10.440
3n3zIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.440