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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1kqcFMNOxygen-insensitive NAD(P)H nitroreductase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1kqcFMNOxygen-insensitive NAD(P)H nitroreductase/1.000
1icuFMNOxygen-insensitive NAD(P)H nitroreductase/0.640
1ds7FMNOxygen-insensitive NAD(P)H nitroreductase/0.632
1kqdFMNOxygen-insensitive NAD(P)H nitroreductase/0.632
1kqbFMNOxygen-insensitive NAD(P)H nitroreductase/0.626
1yluFMNOxygen-insensitive NAD(P)H nitroreductase/0.617
1ykiFMNOxygen-insensitive NAD(P)H nitroreductase/0.608
1oonFMNOxygen-insensitive NAD(P)H nitroreductase/0.598
3x21FMNOxygen-insensitive NAD(P)H nitroreductase/0.584
1ylrFMNOxygen-insensitive NAD(P)H nitroreductase/0.582
1oo5FMNOxygen-insensitive NAD(P)H nitroreductase/0.573
1ooqFMNOxygen-insensitive NAD(P)H nitroreductase/0.570
1vfrFMNMajor NAD(P)H-flavin oxidoreductase1.6.990.569
1necFMNOxygen-insensitive NAD(P)H nitroreductase10.555
1icvFMNOxygen-insensitive NAD(P)H nitroreductase/0.541
3x22FMNOxygen-insensitive NAD(P)H nitroreductase/0.532
3ge6FMNNitroreductase/0.527
3qdlFMNOxygen-insensitive NADPH nitroreductase/0.477
2hayFMNPutative NAD(P)H-flavin oxidoreductase/0.476
4qlyFMNEnone reductase CLA-ER/0.472
3eo8FMNPutative nitroreductase/0.448
4eo3FMNBacterioferritin comigratory protein/NADH dehydrogenase/0.448