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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1kq4FADFlavin-dependent thymidylate synthase2.1.1.148

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1kq4FADFlavin-dependent thymidylate synthase2.1.1.1481.000
3g4aFADFlavin-dependent thymidylate synthase2.1.1.1480.598
5iosFADFlavin-dependent thymidylate synthase2.1.1.1480.519
1o29FADFlavin-dependent thymidylate synthase2.1.1.1480.500
4p5bFADFlavin-dependent thymidylate synthase/0.494
3n0bFADFlavin-dependent thymidylate synthase2.1.1.1480.467
4karFADFlavin-dependent thymidylate synthase2.1.1.1480.467
3n0cFADFlavin-dependent thymidylate synthase2.1.1.1480.464
3gwcFADFlavin-dependent thymidylate synthase2.1.1.1480.462
4gteFADFlavin-dependent thymidylate synthase2.1.1.1480.456