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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1klmSPPGag-Pol polyprotein2.7.7.49

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1klmSPPGag-Pol polyprotein2.7.7.491.000
3dleGFAGag-Pol polyprotein2.7.7.490.622
3irxUDRGag-Pol polyprotein2.7.7.490.590
4i7fNVEGag-Pol polyprotein2.7.7.490.583
3ffi3OBGag-Pol polyprotein2.7.7.490.542
1rt2TNKGag-Pol polyprotein2.7.7.490.539
1s1vTNKGag-Pol polyprotein2.7.7.490.536
3t1a5MAGag-Pol polyprotein2.7.7.490.524
1ep4S11Gag-Pol polyprotein2.7.7.490.521
1jlaTNKGag-Pol polyprotein2.7.7.490.521
3dolGWIPol protein/0.520
3is9AC7Gag-Pol polyprotein2.7.7.490.516
1c1bGCAGag-Pol polyprotein2.7.7.490.514
3i0rRT3Gag-Pol polyprotein2.7.7.490.504
3i0sRT7Gag-Pol polyprotein2.7.7.490.500
3m8qDJZGag-Pol polyprotein2.7.7.490.500
3t195MAGag-Pol polyprotein2.7.7.490.499
1rt1MKCGag-Pol polyprotein2.7.7.490.498
3nbpJGZGag-Pol polyprotein2.7.7.490.498
4rw4494Gag-Pol polyprotein2.7.7.490.498
3dokGWJPol protein/0.496
3di6PDZGag-Pol polyprotein2.7.7.490.492
3lakKR1Gag-Pol polyprotein2.7.7.490.492
3dyaPZLGag-Pol polyprotein2.7.7.490.488
2be2R22Gag-Pol polyprotein2.7.7.490.485
3e01PZ2Gag-Pol polyprotein2.7.7.490.483
3lanKBTGag-Pol polyprotein2.7.7.490.480
1rtiHEFGag-Pol polyprotein2.7.7.490.478
1c1c612Gag-Pol polyprotein2.7.7.490.477
3c6tM14Gag-Pol polyprotein2.7.7.490.477
2ze2T27Gag-Pol polyprotein2.7.7.490.473
3tamM06Gag-Pol polyprotein2.7.7.490.473
3dlgGWEGag-Pol polyprotein2.7.7.490.471
1tvrTB9Gag-Pol polyprotein2.7.7.490.468
1hpzAAPGag-Pol polyprotein2.7.7.490.466
1hquHBYGag-Pol polyprotein2.7.7.490.460
3drrR8EGag-Pol polyprotein2.7.7.490.460
4ig3T27Gag-Pol polyprotein2.7.7.490.456
2ynhEURGag-Pol polyprotein2.7.7.490.454
1tl3H20Gag-Pol polyprotein2.7.7.490.453
3lamKRPGag-Pol polyprotein2.7.7.490.453
3pqbVGPPutative oxidoreductase/0.452
4a322CDGlycylpeptide N-tetradecanoyltransferase/0.449
5cyqT27Gag-Pol polyprotein2.7.7.490.448
1xs7MMIBeta-secretase 13.4.23.460.447
2iqgF2IBeta-secretase 13.4.23.460.447
2rkiTT1Gag-Pol polyprotein2.7.7.490.447
1s9eADBGag-Pol polyprotein2.7.7.490.445
3dmjGWEPol protein/0.444
3lpkZ76Beta-secretase 13.4.23.460.442