sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 1klk | PMD | Dihydrofolate reductase | 1.5.1.3 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 1klk | PMD | Dihydrofolate reductase | 1.5.1.3 | 1.000 | |
| 4h96 | 14Q | Dihydrofolate reductase | 1.5.1.3 | 0.588 | |
| 4h95 | 06U | Dihydrofolate reductase | 1.5.1.3 | 0.581 | |
| 1vj3 | TAB | Dihydrofolate reductase | 1.5.1.3 | 0.579 | |
| 3qlw | N22 | Dihydrofolate reductase | 1.5.1.3 | 0.562 | |
| 3qls | 55V | Dihydrofolate reductase | 1.5.1.3 | 0.558 | |
| 4h98 | 14Q | Uncharacterized protein | / | 0.554 | |
| 1m7a | MQU | Dihydrofolate reductase | 1.5.1.3 | 0.553 | |
| 3iro | 2CY | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.553 | |
| 2fzh | DH1 | Dihydrofolate reductase | 1.5.1.3 | 0.552 | |
| 3um5 | CP6 | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.551 | |
| 1daj | MOT | Dihydrofolate reductase | 1.5.1.3 | 0.548 | |
| 3inv | C50 | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.547 | |
| 4h97 | 53S | Dihydrofolate reductase | 1.5.1.3 | 0.543 | |
| 1ia2 | TQ4 | Dihydrofolate reductase | 1.5.1.3 | 0.542 | |
| 1cd2 | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.540 | |
| 2cd2 | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.539 | |
| 3qlr | QLR | Dihydrofolate reductase | 1.5.1.3 | 0.538 | |
| 1dg5 | TOP | Dihydrofolate reductase | 1.5.1.3 | 0.534 | |
| 1j3i | WRA | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.534 | |
| 2fzi | DH3 | Dihydrofolate reductase | 1.5.1.3 | 0.534 | |
| 3eek | 53S | Uncharacterized protein | / | 0.534 | |
| 3qly | 55V | Uncharacterized protein | / | 0.533 | |
| 3dga | RJ1 | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.529 | |
| 3qfx | CP6 | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.528 | |
| 4eil | FOL | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.528 | |
| 4ixe | IXE | Dihydrofolate reductase | 1.5.1.3 | 0.528 | |
| 3k47 | D09 | Dihydrofolate reductase | 1.5.1.3 | 0.526 | |
| 1ia1 | TQ3 | Dihydrofolate reductase | 1.5.1.3 | 0.524 | |
| 1ly3 | COG | Dihydrofolate reductase | 1.5.1.3 | 0.524 | |
| 4dpd | DHF | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.524 | |
| 4dp3 | MMV | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.523 | |
| 3eej | 53R | Uncharacterized protein | / | 0.522 | |
| 1rx3 | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.521 | |
| 3um6 | 1CY | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.521 | |
| 1aoe | GW3 | Dihydrofolate reductase | 1.5.1.3 | 0.516 | |
| 4cd2 | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.516 | |
| 2bl9 | CP6 | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.514 | |
| 2bla | CP6 | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.514 | |
| 4m2x | TMQ | Dihydrofolate reductase | 1.5.1.3 | 0.513 | |
| 1dds | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.512 | |
| 2w3a | TOP | Dihydrofolate reductase | 1.5.1.3 | 0.512 | |
| 4dph | P65 | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.512 | |
| 1m78 | CLZ | Dihydrofolate reductase | 1.5.1.3 | 0.510 | |
| 2w3v | TOP | Dihydrofolate reductase | / | 0.510 | |
| 3irn | 1CY | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.509 | |
| 3jsu | KA5 | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.509 | |
| 3jwc | EKB | Dihydrofolate reductase | / | 0.509 | |
| 1e26 | GPB | Dihydrofolate reductase | 1.5.1.3 | 0.508 | |
| 1m79 | MQ1 | Dihydrofolate reductase | 1.5.1.3 | 0.508 | |
| 3eem | 53V | Uncharacterized protein | / | 0.508 | |
| 3rg9 | WRA | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.508 | |
| 3qlx | QLR | Uncharacterized protein | / | 0.507 | |
| 1dyr | TOP | Dihydrofolate reductase | 1.5.1.3 | 0.506 | |
| 3jwm | 5WB | Dihydrofolate reductase | / | 0.506 | |
| 1hfq | MOT | Dihydrofolate reductase | 1.5.1.3 | 0.505 | |
| 3qgt | CP6 | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.505 | |
| 1ddr | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.503 | |
| 4nx6 | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.503 | |
| 1df7 | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.501 | |
| 3sa1 | 6DR | Dihydrofolate reductase | / | 0.501 | |
| 3um8 | 1CY | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.501 | |
| 3kjs | DQ1 | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.499 | |
| 2zza | FOL | Dihydrofolate reductase | / | 0.497 | |
| 3dg8 | RJ6 | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.497 | |
| 3fyw | XCF | Dihydrofolate reductase | 1.5.1.3 | 0.497 | |
| 4x5f | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.496 | |
| 3d80 | Q22 | Dihydrofolate reductase | 1.5.1.3 | 0.495 | |
| 4x5g | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.495 | |
| 1dg7 | WRB | Dihydrofolate reductase | 1.5.1.3 | 0.494 | |
| 4kak | 06U | Dihydrofolate reductase | 1.5.1.3 | 0.494 | |
| 4kbn | 25U | Dihydrofolate reductase | 1.5.1.3 | 0.493 | |
| 1j3k | WRA | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.492 | |
| 2blc | CP7 | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.492 | |
| 3sh2 | 5DR | Dihydrofolate reductase | 1.5.1.3 | 0.490 | |
| 4m6l | 21V | Dihydrofolate reductase | 1.5.1.3 | 0.490 | |
| 1re7 | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.489 | |
| 4g8z | TOP | Dihydrofolate reductase | 1.5.1.3 | 0.489 | |
| 1qzf | FOL | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.488 | |
| 4ixg | IXG | Dihydrofolate reductase | 1.5.1.3 | 0.488 | |
| 1j3j | CP6 | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.487 | |
| 1boz | PRD | Dihydrofolate reductase | 1.5.1.3 | 0.486 | |
| 3ia4 | MTX | Dihydrofolate reductase | / | 0.486 | |
| 1dra | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.485 | |
| 4kd7 | 9DR | Dihydrofolate reductase | 1.5.1.3 | 0.484 | |
| 3tq9 | MTX | Dihydrofolate reductase | / | 0.483 | |
| 1hfp | MOT | Dihydrofolate reductase | 1.5.1.3 | 0.481 | |
| 3nxo | D2B | Dihydrofolate reductase | 1.5.1.3 | 0.480 | |
| 3och | 2MX | Dihydrofolate reductase | 1.5.1.3 | 0.480 | |
| 4ky4 | 04J | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.480 | |
| 1ia4 | TQ6 | Dihydrofolate reductase | 1.5.1.3 | 0.479 | |
| 4kfj | 1R0 | Dihydrofolate reductase | 1.5.1.3 | 0.478 | |
| 3qg2 | CP6 | Bifunctional dihydrofolate reductase-thymidylate synthase | / | 0.477 | |
| 2blb | CP7 | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.476 | |
| 3irm | 1CY | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.476 | |
| 3oaf | OAG | Dihydrofolate reductase | 1.5.1.3 | 0.476 | |
| 3drc | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.475 | |
| 3fre | TOP | Dihydrofolate reductase | 1.5.1.3 | 0.475 | |
| 3nxv | D2F | Dihydrofolate reductase | 1.5.1.3 | 0.474 | |
| 3sai | 9DR | Dihydrofolate reductase | / | 0.474 | |
| 1ia3 | TQ5 | Dihydrofolate reductase | 1.5.1.3 | 0.473 | |
| 2drc | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.472 | |
| 3l3r | OAG | Dihydrofolate reductase | 1.5.1.3 | 0.472 | |
| 1dhj | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.469 | |
| 4dfr | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.468 | |
| 3nr4 | PYV | Abscisic acid receptor PYL2 | / | 0.467 | |
| 1ra2 | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.466 | |
| 3clb | TMQ | Bifunctional dihydrofolate reductase-thymidylate synthase | 1.5.1.3 | 0.465 | |
| 4keb | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.465 | |
| 7dfr | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.465 | |
| 1rb3 | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.464 | |
| 2w3w | VG9 | Dihydrofolate reductase | / | 0.464 | |
| 3srq | Q19 | Dihydrofolate reductase | 1.5.1.3 | 0.464 | |
| 4p66 | MTX | Dihydrofolate reductase | / | 0.464 | |
| 3nxt | D2E | Dihydrofolate reductase | 1.5.1.3 | 0.463 | |
| 4kjj | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.463 | |
| 3ix9 | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.462 | |
| 2vn0 | TDZ | Cytochrome P450 2C8 | / | 0.461 | |
| 3frd | DHF | Dihydrofolate reductase | 1.5.1.3 | 0.461 | |
| 4j6c | STR | Cytochrome P450 monooxygenase | / | 0.460 | |
| 1s3y | TQT | Dihydrofolate reductase | 1.5.1.3 | 0.459 | |
| 2fzj | DH3 | Dihydrofolate reductase | 1.5.1.3 | 0.459 | |
| 3frf | XCF | Dihydrofolate reductase | 1.5.1.3 | 0.459 | |
| 4fgg | 0U5 | Dihydrofolate reductase | 1.5.1.3 | 0.459 | |
| 5ccc | DDF | Dihydrofolate reductase | 1.5.1.3 | 0.459 | |
| 1jol | FFO | Dihydrofolate reductase | 1.5.1.3 | 0.458 | |
| 3nxr | D2D | Dihydrofolate reductase | 1.5.1.3 | 0.458 | |
| 3sa2 | 7DR | Dihydrofolate reductase | / | 0.458 | |
| 1dyi | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.457 | |
| 1ohk | COP | Dihydrofolate reductase | 1.5.1.3 | 0.457 | |
| 2dhf | DZF | Dihydrofolate reductase | 1.5.1.3 | 0.457 | |
| 3tq8 | TOP | Dihydrofolate reductase | / | 0.457 | |
| 1pd9 | CO4 | Dihydrofolate reductase | 1.5.1.3 | 0.456 | |
| 1rd7 | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.456 | |
| 3i8a | N22 | Dihydrofolate reductase | 1.5.1.3 | 0.456 | |
| 4nx7 | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.456 | |
| 3jw5 | TOP | Dihydrofolate reductase | / | 0.455 | |
| 3nj0 | PYV | Abscisic acid receptor PYL2 | / | 0.455 | |
| 3tqb | FOL | Dihydrofolate reductase | / | 0.455 | |
| 4x5i | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.455 | |
| 1s3v | TQD | Dihydrofolate reductase | 1.5.1.3 | 0.454 | |
| 1xom | CIO | cAMP-specific 3',5'-cyclic phosphodiesterase 4D | 3.1.4.53 | 0.454 | |
| 3eig | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.454 | |
| 3ql3 | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.453 | |
| 4ixf | IXF | Dihydrofolate reductase | 1.5.1.3 | 0.453 | |
| 1rb2 | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.451 | |
| 1s3u | TQD | Dihydrofolate reductase | 1.5.1.3 | 0.451 | |
| 1drb | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.450 | |
| 1y2e | 5DE | cAMP-specific 3',5'-cyclic phosphodiesterase 4D | 3.1.4.53 | 0.450 | |
| 1ohj | COP | Dihydrofolate reductase | 1.5.1.3 | 0.449 | |
| 4enh | FVX | Cholesterol 24-hydroxylase | / | 0.449 | |
| 2vbp | VB1 | Isopenicillin N synthase | 1.21.3.1 | 0.448 | |
| 4x5j | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.448 | |
| 1dr4 | HBI | Dihydrofolate reductase | 1.5.1.3 | 0.447 | |
| 1dyh | DZF | Dihydrofolate reductase | 1.5.1.3 | 0.447 | |
| 1kms | LIH | Dihydrofolate reductase | 1.5.1.3 | 0.447 | |
| 1rc4 | DDF | Dihydrofolate reductase | 1.5.1.3 | 0.447 | |
| 3dfr | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.447 | |
| 3sgy | 06W | Dihydrofolate reductase | 1.5.1.3 | 0.447 | |
| 4fhb | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.447 | |
| 1ly4 | COQ | Dihydrofolate reductase | 1.5.1.3 | 0.446 | |
| 1s3w | TQT | Dihydrofolate reductase | 1.5.1.3 | 0.446 | |
| 5hs1 | VOR | Lanosterol 14-alpha demethylase | / | 0.446 | |
| 1u72 | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.444 | |
| 2vcm | M11 | Isopenicillin N synthase | 1.21.3.1 | 0.444 | |
| 2y60 | M8F | Isopenicillin N synthase | 1.21.3.1 | 0.444 | |
| 1dyj | DDF | Dihydrofolate reductase | 1.5.1.3 | 0.443 | |
| 1mvs | DTM | Dihydrofolate reductase | 1.5.1.3 | 0.443 | |
| 3mdv | CL6 | Cholesterol 24-hydroxylase | / | 0.443 | |
| 3qm4 | PN0 | Cytochrome P450 2D6 | / | 0.443 | |
| 4p68 | MTX | Dihydrofolate reductase | / | 0.443 | |
| 1ao8 | MTX | Dihydrofolate reductase | 1.5.1.3 | 0.442 | |
| 1hb3 | SCV | Isopenicillin N synthase | 1.21.3.1 | 0.442 | |
| 4ej1 | FOL | Dihydrofolate reductase | 1.5.1.3 | 0.442 | |
| 1uzw | CDH | Isopenicillin N synthase | 1.21.3.1 | 0.441 | |
| 3fra | I2H | Dihydrofolate reductase | 1.5.1.3 | 0.441 | |
| 3ntz | 3TZ | Dihydrofolate reductase | 1.5.1.3 | 0.441 | |
| 4elg | 52J | Dihydrofolate reductase | / | 0.441 | |
| 4iv2 | 1GR | Estrogen receptor | / | 0.440 | |
| 4j6d | TES | Cytochrome P450 monooxygenase | / | 0.440 |