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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1k6vXN2Gag-Pol polyprotein3.4.23.16

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1k6vXN2Gag-Pol polyprotein3.4.23.161.000
1k6cMK1Gag-Pol polyprotein3.4.23.160.781
1k6pXN3Gag-Pol polyprotein3.4.23.160.715
3nwq2NCGag-Pol polyprotein3.4.23.160.535
1k6tXN1Gag-Pol polyprotein3.4.23.160.494
2avvMK1Gag-Pol polyprotein3.4.23.160.489
3oxcROCProtease/0.482
1fg80Q4Gag-Pol polyprotein3.4.23.160.477
2b7zMK1Gag-Pol polyprotein/0.469
2qhcAB1Protease/0.469
3nwxKVSGag-Pol polyprotein3.4.23.160.468
2xyfG40Gag-Pol polyprotein/0.464
1sguMK1Gag-Pol polyprotein3.4.23.160.460
2xyeCXGGag-Pol polyprotein/0.460
3nxe2NCProtease/0.458
4a4qUX9Pol protein/0.457
1hpxKNIGag-Pol polyprotein/0.455
2wl05AHGag-Pol polyprotein/0.455
1hsgMK1Gag-Pol polyprotein/0.453
3zptM8YGag-Pol polyprotein3.4.23.160.453
3i7eDJRGag-Pol polyprotein/0.452
1c70L75Protease/0.451
2bpw1INGag-Pol polyprotein3.4.23.160.449
3zpsEQMGag-Pol polyprotein3.4.23.160.449
1c6yMK1Protease/0.448
3zpuM8BGag-Pol polyprotein3.4.23.160.448
1fej2NCGag-Pol polyprotein3.4.23.160.447
1ivp1ZKGag-Pol polyprotein/0.447
2aquDR7Gag-Pol polyprotein3.4.23.160.447
3ggxGGXGag-Pol polyprotein/0.447
1wbmBLLPol protein/0.445
3ekp478Gag-Pol polyprotein3.4.23.160.445
2nmyROCProtease/0.444
1hshMK1Gag-Pol polyprotein/0.443
2bpz3INGag-Pol polyprotein3.4.23.160.443
3ndxRITGag-Pol polyprotein3.4.23.160.442
2qnqQN3Gag-Pol polyprotein3.4.23.160.441
1ebwBEIGag-Pol polyprotein3.4.23.160.440
2wkz5AHGag-Pol polyprotein/0.440
3ggaGGWGag-Pol polyprotein/0.440