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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1k6tXN1Gag-Pol polyprotein3.4.23.16

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1k6tXN1Gag-Pol polyprotein3.4.23.161.000
1k6cMK1Gag-Pol polyprotein3.4.23.160.644
3nwq2NCGag-Pol polyprotein3.4.23.160.624
1k6vXN2Gag-Pol polyprotein3.4.23.160.542
1k6pXN3Gag-Pol polyprotein3.4.23.160.541
3nwxKVSGag-Pol polyprotein3.4.23.160.534
3el4ROCGag-Pol polyprotein3.4.23.160.504
1hpxKNIGag-Pol polyprotein/0.496
3nxe2NCProtease/0.495
4j55031Gag-Pol polyprotein3.4.23.160.495
1hsgMK1Gag-Pol polyprotein/0.486
3i7eDJRGag-Pol polyprotein/0.481
1xl2189Gag-Pol polyprotein3.4.23.160.478
1fej2NCGag-Pol polyprotein3.4.23.160.475
2bpw1INGag-Pol polyprotein3.4.23.160.473
2r43G3GGag-Pol polyprotein3.4.23.160.470
1sguMK1Gag-Pol polyprotein3.4.23.160.469
2avvMK1Gag-Pol polyprotein3.4.23.160.467
4j5j478Gag-Pol polyprotein3.4.23.160.467
1npa3NHGag-Pol polyprotein3.4.23.160.466
1npwLGZGag-Pol polyprotein3.4.23.160.466
3cktYDPGag-Pol polyprotein3.4.23.160.466
1c6yMK1Protease/0.465
1c70L75Protease/0.465
1k1u0Q4Gag-Pol polyprotein3.4.23.160.464
3el51UNGag-Pol polyprotein/0.464
1hvjA78Gag-Pol polyprotein/0.463
1t7kBH0Gag-Pol polyprotein3.4.23.160.461
2pwcG3GGag-Pol polyprotein3.4.23.160.461
2qnqQN3Gag-Pol polyprotein3.4.23.160.459
3t3c017Gag-Pol polyprotein3.4.23.160.456
2qhcAB1Protease/0.454
3ekp478Gag-Pol polyprotein3.4.23.160.452
1hviA77Protease/0.451
2pym1UNGag-Pol polyprotein3.4.23.160.451
1a8g2Z4Gag-Pol polyprotein3.4.23.160.450
1wbk568Pol protein/0.450
2bpy3INGag-Pol polyprotein3.4.23.160.450
3bgbLJGGag-Pol polyprotein3.4.23.160.450
1ebwBEIGag-Pol polyprotein3.4.23.160.449
2bb9AKCGag-Pol polyprotein3.4.23.160.449
2nnkROCProtease/0.449
2fxdDR7Pol polyprotein/0.448
2r38G4GGag-Pol polyprotein3.4.23.160.448
4a6cQG9Gag-Pol polyprotein3.4.23.160.448
2nmyROCProtease/0.447
3bgcLJHGag-Pol polyprotein3.4.23.160.447
3vfa031Gag-Pol polyprotein3.4.23.160.447
1d4jMSCGag-Pol polyprotein3.4.23.160.446
1ivp1ZKGag-Pol polyprotein/0.446
3kfs3TLGag-Pol polyprotein/0.446
3s85LK0Gag-Pol polyprotein/0.446
3ekwDR7Gag-Pol polyprotein3.4.23.160.445
3ggaGGWGag-Pol polyprotein/0.445
3linE13Protease/0.445
1b6mPI6Gag-Pol polyprotein3.4.23.160.444
3ttp017Gag-Pol polyprotein3.4.23.160.444
1b6pPI7Gag-Pol polyprotein3.4.23.160.443
1daz0Q4Gag-Pol polyprotein3.4.23.160.443
1ec3MS3Gag-Pol polyprotein3.4.23.160.443
1hiiC20Gag-Pol polyprotein/0.443
2qd8065Gag-Pol polyprotein3.4.23.160.443
3nduROCGag-Pol polyprotein3.4.23.160.443
1hvlA76Gag-Pol polyprotein/0.442
1kzkJE2Gag-Pol polyprotein3.4.23.160.442
2hc0AB2Protease/0.442
3oxv478Gag-Pol polyprotein3.4.23.160.442
3qihNI7Gag-Pol polyprotein3.4.23.160.442
4ye3G04Gag-Pol polyprotein3.4.23.160.442
1d4hBEHGag-Pol polyprotein3.4.23.160.441
1ec2BEJGag-Pol polyprotein3.4.23.160.441
1hxbROCGag-Pol polyprotein3.4.23.160.441
3cyxROCGag-Pol polyprotein3.4.23.160.441
3sa323XProtease/0.441
1sdtMK1Gag-Pol polyprotein3.4.23.160.440
2aquDR7Gag-Pol polyprotein3.4.23.160.440
2b7zMK1Gag-Pol polyprotein/0.440
2bqvA1AProtease/0.440
2q641UNGag-Pol polyprotein3.4.23.160.440
2qak1UNGag-Pol polyprotein3.4.23.160.440
3dk1G05Gag-Pol polyprotein3.4.23.160.440
3tl9ROCGag-Pol polyprotein3.4.23.160.440
3zptM8YGag-Pol polyprotein3.4.23.160.440