Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1k4hAPQQueuine tRNA-ribosyltransferase2.4.2.29

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1k4hAPQQueuine tRNA-ribosyltransferase2.4.2.291.000
1k4gAIQQueuine tRNA-ribosyltransferase2.4.2.290.692
4hshQEIQueuine tRNA-ribosyltransferase2.4.2.290.520
2qzrS79Queuine tRNA-ribosyltransferase2.4.2.290.502
1f3eDPZQueuine tRNA-ribosyltransferase2.4.2.290.497
4gh10WXQueuine tRNA-ribosyltransferase2.4.2.290.493
1n2vBDIQueuine tRNA-ribosyltransferase2.4.2.290.474
2bbf344Queuine tRNA-ribosyltransferase2.4.2.290.465
1efzPRFQueuine tRNA-ribosyltransferase2.4.2.290.464
4giy0WYQueuine tRNA-ribosyltransferase2.4.2.290.464
4gg90WWQueuine tRNA-ribosyltransferase2.4.2.290.463
3gc4AAQQueuine tRNA-ribosyltransferase2.4.2.290.459
2z1wBDIQueuine tRNA-ribosyltransferase2.4.2.290.456
1y5xE89Queuine tRNA-ribosyltransferase2.4.2.290.452
5dp2NAPCurF/0.447
4q8pCKRQueuine tRNA-ribosyltransferase2.4.2.290.445
3rtnRTNBeta-secretase 13.4.23.460.444
1y5wNEZQueuine tRNA-ribosyltransferase2.4.2.290.443
2jb4A14Isopenicillin N synthase1.21.3.10.443
3gc52MQQueuine tRNA-ribosyltransferase2.4.2.290.443
3rsv3RSBeta-secretase 13.4.23.460.443
4fsa0V3Queuine tRNA-ribosyltransferase2.4.2.290.443