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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1k02FMNNADPH dehydrogenase 11.6.99.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1k02FMNNADPH dehydrogenase 11.6.99.11.000
1oycFMNNADPH dehydrogenase 11.6.99.10.593
4rnwFMNNADPH dehydrogenase 11.6.99.10.583
4tmbFMNOld yellow enzyme/0.572
4tmcFMNOld yellow enzyme/0.561
4rnvFMNNADPH dehydrogenase 11.6.99.10.553
4rnxFMNNADPH dehydrogenase 11.6.99.10.551
3p67FMNPentaerythritol tetranitrate reductase/0.550
4h6kFMNNADPH dehydrogenase 11.6.99.10.550
3hgrFMN12-oxophytodienoate reductase 11.3.1.420.548
1bwkFMNNADPH dehydrogenase 11.6.99.10.545
1vjiFMN12-oxophytodienoate reductase 11.3.1.420.541
1icqFMN12-oxophytodienoate reductase 11.3.1.420.540
1icsFMN12-oxophytodienoate reductase 11.3.1.420.533
1oyaFMNNADPH dehydrogenase 11.6.99.10.529
1vyrFMNPentaerythritol tetranitrate reductase/0.527
1h50FMNPentaerythritol tetranitrate reductase/0.524
1h51FMNPentaerythritol tetranitrate reductase/0.523
1h63FMNPentaerythritol tetranitrate reductase/0.521
2abbFMNPentaerythritol tetranitrate reductase/0.520
4df2FMNNADPH dehydrogenase/0.515
4awtFMNNADH:flavin oxidoreductase Sye1/0.514
1bwlFMNNADPH dehydrogenase 11.6.99.10.512
4qaiFMNNADPH dehydrogenase/0.508
3hgsFMN12-oxophytodienoate reductase 31.3.1.420.506
1icpFMN12-oxophytodienoate reductase 11.3.1.420.505
3p82FMNPentaerythritol tetranitrate reductase/0.503
4awsFMNNADH:flavin oxidoreductase Sye1/0.501
2hs6FMN12-oxophytodienoate reductase 31.3.1.420.500
4e2dFMNDehydrogenase/0.500
4k7yFMNNADPH dehydrogenase 11.6.99.10.500
3p8iFMNPentaerythritol tetranitrate reductase/0.499
3p62FMNPentaerythritol tetranitrate reductase/0.497
2hs8FMN12-oxophytodienoate reductase 31.3.1.420.495
3p74FMNPentaerythritol tetranitrate reductase/0.495
2gouFMNNADH:flavin oxidoreductase Sye1/0.494
4jicFMNGTN Reductase/0.492
3hgoFMN12-oxophytodienoate reductase 31.3.1.420.491
4rnuFMNNADPH dehydrogenase 11.6.99.10.491
4a3uFMNNADH:flavin oxidoreductase/NADH oxidase/0.484
4m5pFMNNADPH dehydrogenase/0.480
2gqaFMNNADH:flavin oxidoreductase Sye1/0.478
2q3rFMN12-oxophytodienoate reductase 11.3.1.420.474
3f03FMNPentaerythritol tetranitrate reductase/0.474
1q45FMN12-oxophytodienoate reductase 31.3.1.420.473
4e2bFMNDehydrogenase/0.473
3atzFMNProstaglandin F2a synthase/0.462
4b5nFMNNAD(P)H:flavin oxidoreductase Sye4/0.462
3gkaFMNN-ethylmaleimide reductase/0.460
3l5lFMNXenobiotic reductase/0.459
2q3oFMN12-oxophytodienoate reductase 31.3.1.420.458
3p84FMNPentaerythritol tetranitrate reductase/0.457
3atyFMNProstaglandin F2a synthase/0.451
2e8uIPEGeranylgeranyl pyrophosphate synthase/0.449
1xs7MMIBeta-secretase 13.4.23.460.448
3p8jFMNPentaerythritol tetranitrate reductase/0.447
5bv3M7Gm7GpppX diphosphatase3.6.1.590.445
1n95HFPProtein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha/0.440
1n95HFPProtein farnesyltransferase subunit beta2.5.1.580.440