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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1jr8FADFAD-linked sulfhydryl oxidase ERV21.8.3.2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1jr8FADFAD-linked sulfhydryl oxidase ERV21.8.3.21.000
1jraFADFAD-linked sulfhydryl oxidase ERV21.8.3.20.506
4e0hFADMitochondrial FAD-linked sulfhydryl oxidase ERV11.8.3.20.474
2hj3FADFAD-linked sulfhydryl oxidase ERV1/0.473
3llkFADSulfhydryl oxidase 11.8.3.20.468
3w4yFADMitochondrial FAD-linked sulfhydryl oxidase ERV11.8.3.20.466
3r7cFADFAD-linked sulfhydryl oxidase ALR1.8.3.20.464
3mbgFADFAD-linked sulfhydryl oxidase ALR1.8.3.20.447
4e0iFADMitochondrial FAD-linked sulfhydryl oxidase ERV11.8.3.20.446