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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1jlaTNKGag-Pol polyprotein2.7.7.49

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1jlaTNKGag-Pol polyprotein2.7.7.491.000
1rt2TNKGag-Pol polyprotein2.7.7.490.655
3dmjGWEPol protein/0.649
3dlgGWEGag-Pol polyprotein2.7.7.490.608
4i7fNVEGag-Pol polyprotein2.7.7.490.598
1c1bGCAGag-Pol polyprotein2.7.7.490.569
3dleGFAGag-Pol polyprotein2.7.7.490.568
3ffi3OBGag-Pol polyprotein2.7.7.490.568
3dolGWIPol protein/0.564
3irxUDRGag-Pol polyprotein2.7.7.490.555
1rt1MKCGag-Pol polyprotein2.7.7.490.544
3i0rRT3Gag-Pol polyprotein2.7.7.490.544
1s1vTNKGag-Pol polyprotein2.7.7.490.543
3lamKRPGag-Pol polyprotein2.7.7.490.542
3dyaPZLGag-Pol polyprotein2.7.7.490.539
3drrR8EGag-Pol polyprotein2.7.7.490.537
3dokGWJPol protein/0.531
3is9AC7Gag-Pol polyprotein2.7.7.490.531
3e01PZ2Gag-Pol polyprotein2.7.7.490.530
3c6tM14Gag-Pol polyprotein2.7.7.490.528
3di6PDZGag-Pol polyprotein2.7.7.490.526
1klmSPPGag-Pol polyprotein2.7.7.490.522
1ep4S11Gag-Pol polyprotein2.7.7.490.520
4rw4494Gag-Pol polyprotein2.7.7.490.520
3lakKR1Gag-Pol polyprotein2.7.7.490.517
1rtiHEFGag-Pol polyprotein2.7.7.490.516
3nbpJGZGag-Pol polyprotein2.7.7.490.513
3c6uM22Gag-Pol polyprotein2.7.7.490.511
1tvrTB9Gag-Pol polyprotein2.7.7.490.510
3lanKBTGag-Pol polyprotein2.7.7.490.510
3i0sRT7Gag-Pol polyprotein2.7.7.490.508
3t1a5MAGag-Pol polyprotein2.7.7.490.505
1c1c612Gag-Pol polyprotein2.7.7.490.503
2be2R22Gag-Pol polyprotein2.7.7.490.499
5cyqT27Gag-Pol polyprotein2.7.7.490.499
1hquHBYGag-Pol polyprotein2.7.7.490.496
2ynfWHUGag-Pol polyprotein2.7.7.490.494
3t195MAGag-Pol polyprotein2.7.7.490.488
3m8qDJZGag-Pol polyprotein2.7.7.490.487
1hpzAAPGag-Pol polyprotein2.7.7.490.484
3drpR8EGag-Pol polyprotein2.7.7.490.484
3tamM06Gag-Pol polyprotein2.7.7.490.484
2rkiTT1Gag-Pol polyprotein2.7.7.490.482
2ze2T27Gag-Pol polyprotein2.7.7.490.481
2ic3HBYGag-Pol polyprotein2.7.7.490.476
1tl3H20Gag-Pol polyprotein2.7.7.490.472
1tktH12Gag-Pol polyprotein2.7.7.490.467
1vruAAPGag-Pol polyprotein2.7.7.490.464
1tkzH16Gag-Pol polyprotein2.7.7.490.463
2ynhEURGag-Pol polyprotein2.7.7.490.461
1hnvTBOGag-Pol polyprotein2.7.7.490.460
1s9eADBGag-Pol polyprotein2.7.7.490.460
4ig3T27Gag-Pol polyprotein2.7.7.490.459
1xzqFONtRNA modification GTPase MnmE3.6.50.457
1ikwEFZGag-Pol polyprotein2.7.7.490.456
4a95NHWGlycylpeptide N-tetradecanoyltransferase/0.455
1revTB9Gag-Pol polyprotein2.7.7.490.454
4ko0JLJGag-Pol polyprotein2.7.7.490.452
1tkxGWBGag-Pol polyprotein2.7.7.490.451
1hniAAAGag-Pol polyprotein2.7.7.490.450
1ikyMSDGag-Pol polyprotein2.7.7.490.448
5a27MYAGlycylpeptide N-tetradecanoyltransferase/0.447
1eetBFUGag-Pol polyprotein2.7.7.490.446
3czr3CZCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.446
4mq12C3Dual specificity tyrosine-phosphorylation-regulated kinase 1A2.7.12.10.446
4ia2BIVVitamin D3 receptor A/0.444
1rt7UC4Gag-Pol polyprotein2.7.7.490.443
1pkfEPDEpothilone C/D epoxidase1.140.442
4b14NHWGlycylpeptide N-tetradecanoyltransferase/0.442
4z44FADFlavin-dependent tryptophan halogenase PrnA1.14.19.90.441
3sn6P0GBeta-2 adrenergic receptor/0.441
5ag7MYAGlycylpeptide N-tetradecanoyltransferase/0.440