Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1ivsVAAValine--tRNA ligase6.1.1.9

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1ivsVAAValine--tRNA ligase6.1.1.91.000
1gaxVAAValine--tRNA ligase6.1.1.90.655
3coy53HPantothenate synthetase6.3.2.10.482
3ziuLSSLeucyl-tRNA synthetase/0.479
3zgz84TLeucine--tRNA ligase/0.468
1pfyMSPMethionine--tRNA ligase6.1.1.100.467
1nupNMNNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3/0.459
5kwvANPPantothenate synthetase/0.458
3ivxFG6Pantothenate synthetase6.3.2.10.457
1n2hPAJPantothenate synthetase6.3.2.10.454
2cv2GSUGlutamate--tRNA ligase6.1.1.170.454
3ivgFG5Pantothenate synthetase6.3.2.10.448
1x1aSAMC-20 methyltransferase/0.442