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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1i5aACPChemotaxis protein CheA2.7.13.3

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1i5aACPChemotaxis protein CheA2.7.13.31.000
1i5bANPChemotaxis protein CheA2.7.13.30.737
1i59ANPChemotaxis protein CheA2.7.13.30.577
1i59ADPChemotaxis protein CheA2.7.13.30.510
1i5cADPChemotaxis protein CheA2.7.13.30.509
1i58ACPChemotaxis protein CheA2.7.13.30.492
1i58ADPChemotaxis protein CheA2.7.13.30.457
3h4lANPDNA mismatch repair protein PMS1/0.452