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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1hquHBYGag-Pol polyprotein2.7.7.49

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1hquHBYGag-Pol polyprotein2.7.7.491.000
1hnvTBOGag-Pol polyprotein2.7.7.490.539
1hpzAAPGag-Pol polyprotein2.7.7.490.536
2ic3HBYGag-Pol polyprotein2.7.7.490.533
3ffi3OBGag-Pol polyprotein2.7.7.490.532
1revTB9Gag-Pol polyprotein2.7.7.490.526
3i0rRT3Gag-Pol polyprotein2.7.7.490.520
1tktH12Gag-Pol polyprotein2.7.7.490.519
4i7fNVEGag-Pol polyprotein2.7.7.490.516
1s9eADBGag-Pol polyprotein2.7.7.490.510
1s6qTPBGag-Pol polyprotein2.7.7.490.506
1c1bGCAGag-Pol polyprotein2.7.7.490.505
4kko1REGag-Pol polyprotein2.7.7.490.497
2ze2T27Gag-Pol polyprotein2.7.7.490.496
1tl1H18Gag-Pol polyprotein2.7.7.490.495
3dleGFAGag-Pol polyprotein2.7.7.490.490
1tl3H20Gag-Pol polyprotein2.7.7.490.488
4ko0JLJGag-Pol polyprotein2.7.7.490.486
1c1c612Gag-Pol polyprotein2.7.7.490.483
1ikwEFZGag-Pol polyprotein2.7.7.490.483
1rt5UC2Gag-Pol polyprotein2.7.7.490.483
1ikvEFZGag-Pol polyprotein2.7.7.490.482
3dmjGWEPol protein/0.482
1vruAAPGag-Pol polyprotein2.7.7.490.479
3lamKRPGag-Pol polyprotein2.7.7.490.478
1jlaTNKGag-Pol polyprotein2.7.7.490.477
1tkzH16Gag-Pol polyprotein2.7.7.490.476
1ikyMSDGag-Pol polyprotein2.7.7.490.475
1rt2TNKGag-Pol polyprotein2.7.7.490.475
1ikxPNUGag-Pol polyprotein2.7.7.490.473
1tvrTB9Gag-Pol polyprotein2.7.7.490.472
2rf2MRXGag-Pol polyprotein2.7.7.490.469
3i0sRT7Gag-Pol polyprotein2.7.7.490.468
3m8qDJZGag-Pol polyprotein2.7.7.490.468
3megT27Gag-Pol polyprotein2.7.7.490.467
4i2q1BTGag-Pol polyprotein2.7.7.490.466
1tkxGWBGag-Pol polyprotein2.7.7.490.465
1eetBFUGag-Pol polyprotein2.7.7.490.464
1rt4UC1Gag-Pol polyprotein2.7.7.490.464
1klmSPPGag-Pol polyprotein2.7.7.490.461
2opqHBQGag-Pol polyprotein2.7.7.490.461
2wufKEM4,5:9,10-diseco-3-hydroxy-5,9,17-trioxoandrosta-1(10),2-diene-4-oate hydrolase3.7.1.170.461
2vg7NNIGag-Pol polyprotein2.7.7.490.458
1s1vTNKGag-Pol polyprotein2.7.7.490.456
1s1wUC1Gag-Pol polyprotein2.7.7.490.454
3med65BGag-Pol polyprotein2.7.7.490.453
3di6PDZGag-Pol polyprotein2.7.7.490.452
5cyqT27Gag-Pol polyprotein2.7.7.490.452
1ep4S11Gag-Pol polyprotein2.7.7.490.451
1rt1MKCGag-Pol polyprotein2.7.7.490.450
2zjwREFCasein kinase II subunit alpha2.7.11.10.450
3m8p65BGag-Pol polyprotein2.7.7.490.450
3meeT27Gag-Pol polyprotein2.7.7.490.450
1k7l544Peroxisome proliferator-activated receptor alpha/0.448
2rkiTT1Gag-Pol polyprotein2.7.7.490.447
1rt7UC4Gag-Pol polyprotein2.7.7.490.446
4mq12C3Dual specificity tyrosine-phosphorylation-regulated kinase 1A2.7.12.10.446
1pdhFASp-hydroxybenzoate hydroxylase/0.445
3kpkFADSulfide-quinone reductase/0.444
3mec65BGag-Pol polyprotein2.7.7.490.444
2bu9HFVIsopenicillin N synthase1.21.3.10.443
3lanKBTGag-Pol polyprotein2.7.7.490.442
3nbpJGZGag-Pol polyprotein2.7.7.490.442
2wyvNADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.441
3up4FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.440
4aqc88ATyrosine-protein kinase JAK2/0.440