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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1hb1OCVIsopenicillin N synthase1.21.3.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1hb1OCVIsopenicillin N synthase1.21.3.11.000
1hb3SCVIsopenicillin N synthase1.21.3.10.921
2iviACWIsopenicillin N synthase1.21.3.10.881
2jb4A14Isopenicillin N synthase1.21.3.10.857
1bk0ACVIsopenicillin N synthase1.21.3.10.849
3zoiM2WIsopenicillin N synthase1.21.3.10.834
2vbdV10Isopenicillin N synthase1.21.3.10.833
3zkyWT4Isopenicillin N synthase1.21.3.10.781
4bb3KKAIsopenicillin N synthase1.21.3.10.775
2bu9HFVIsopenicillin N synthase1.21.3.10.767
1w06W05Isopenicillin N synthase1.21.3.10.765
1qiqACCIsopenicillin N synthase1.21.3.10.750
1uzwCDHIsopenicillin N synthase1.21.3.10.734
2y60M8FIsopenicillin N synthase1.21.3.10.706
3zkuHCVIsopenicillin N synthase1.21.3.10.679
1qjfACSIsopenicillin N synthase1.21.3.10.657
1oc1ASVIsopenicillin N synthase1.21.3.10.654
2vbpVB1Isopenicillin N synthase1.21.3.10.653
2vcmM11Isopenicillin N synthase1.21.3.10.646
1obnASVIsopenicillin N synthase1.21.3.10.645
2y6fM9FIsopenicillin N synthase1.21.3.10.629
2wo7ASVIsopenicillin N synthase1.21.3.10.620
1blzACVIsopenicillin N synthase1.21.3.10.613
2bjsACVIsopenicillin N synthase1.21.3.10.600
1odnAPVIsopenicillin N synthase1.21.3.10.517