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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1h5rTHMGlucose-1-phosphate thymidylyltransferase 1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1h5rTHMGlucose-1-phosphate thymidylyltransferase 1/1.000
1h5sTMPGlucose-1-phosphate thymidylyltransferase 1/0.624
1g3lTRHGlucose-1-phosphate thymidylyltransferase/0.556
4ho5DAUGlucose-1-phosphate thymidylyltransferase/0.543
1iinUPGGlucose-1-phosphate thymidylyltransferase2.7.7.240.540
4ho2THMGlucose-1-phosphate thymidylyltransferase/0.540
4ho9GDUGlucose-1-phosphate thymidylyltransferase/0.527
1h5tDAUGlucose-1-phosphate thymidylyltransferase 1/0.525
4ho8UPGGlucose-1-phosphate thymidylyltransferase/0.516
5ifyTRHGlucose-1-phosphate thymidylyltransferase/0.493
1g1lDAUGlucose-1-phosphate thymidylyltransferase/0.487
1mp4UPGGlucose-1-phosphate thymidylyltransferase/0.483
1mp5UPGGlucose-1-phosphate thymidylyltransferase2.7.7.240.482
3d8vUD1Bifunctional protein GlmU/0.474
4ho3TTPGlucose-1-phosphate thymidylyltransferase/0.473
4g3pUD1Bifunctional protein GlmU/0.471
4g3sUD1Bifunctional protein GlmU/0.464
3dj4UD1Bifunctional protein GlmU/0.459
1hv9UD1Bifunctional protein GlmU/0.447
4g3qUD1Bifunctional protein GlmU/0.446