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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1g8oU5PN-acetyllactosaminide alpha-1,3-galactosyltransferase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1g8oU5PN-acetyllactosaminide alpha-1,3-galactosyltransferase/1.000
4kc2WS2Histo-blood group ABO system transferase/0.563
3v0m5GWHisto-blood group ABO system transferase/0.553
4kc1WS1Histo-blood group ABO system transferase/0.534
1g93UPGN-acetyllactosaminide alpha-1,3-galactosyltransferase/0.530
2vs5GDUN-acetyllactosaminide alpha-1,3-galactosyltransferase/0.524
3v0p4GWHisto-blood group ABO system transferase/0.511
5c1gGDUHisto-blood group ABO system transferase/0.508
3v0o4GWHisto-blood group ABO system transferase/0.507
5c3aURMHisto-blood group ABO system transferase/0.495
2vfzUPFN-acetyllactosaminide alpha-1,3-galactosyltransferase/0.490
4kc4WS3Histo-blood group ABO system transferase/0.481
3dy85GPHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.452
2bu9HFVIsopenicillin N synthase1.21.3.10.451
1ro6ROLcAMP-specific 3',5'-cyclic phosphodiesterase 4B3.1.4.530.446