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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1fncFDAFerredoxin--NADP reductase, chloroplastic1.18.1.2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1fncFDAFerredoxin--NADP reductase, chloroplastic1.18.1.21.000
1fndFADFerredoxin--NADP reductase, chloroplastic1.18.1.20.807
1bx1FADFerredoxin--NADP reductase, chloroplastic1.18.1.20.656
4af7FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.655
1fnbFADFerredoxin--NADP reductase, chloroplastic1.18.1.20.644
3vo2FADFerredoxin--NADP reductase/0.620
1gawFADFerredoxin/0.618
3zc3FADFerredoxin--NADP reductase1.18.1.20.613
1go2FADFerredoxin--NADP reductase1.18.1.20.608
1gjrFADFerredoxin--NADP reductase1.18.1.20.607
1h85FADFerredoxin--NADP reductase1.18.1.20.603
4af6FADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.600
3w5uFADFerredoxin/0.595
1qh0FADFerredoxin--NADP reductase1.18.1.20.594
4c43FADFerredoxin--NADP reductase1.18.1.20.594
1bjkFADFerredoxin--NADP reductase1.18.1.20.582
1qgyFADFerredoxin--NADP reductase1.18.1.20.580
3zbtFADFerredoxin--NADP reductase1.18.1.20.577
1bx0FADFerredoxin--NADP reductase, chloroplastic1.18.1.20.576
1e64FADFerredoxin--NADP reductase1.18.1.20.574
4bprFADFerredoxin--NADP reductase1.18.1.20.574
1gaqFADFerredoxin/0.572
1sm4FADFerredoxin--NADP reductase/0.572
1e63FADFerredoxin--NADP reductase1.18.1.20.568
2b5oFADFerredoxin--NADP reductase1.18.1.20.556
3mhpFADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.556
1h42FADFerredoxin--NADP reductase1.18.1.20.554
1w35FADFerredoxin--NADP reductase1.18.1.20.554
1ogiFADFerredoxin--NADP reductase1.18.1.20.552
2rc6FADFerredoxin--NADP reductase/0.551
1amoFADNADPH--cytochrome P450 reductase/0.549
1queFADFerredoxin--NADP reductase1.18.1.20.547
1ogjFADFerredoxin--NADP reductase1.18.1.20.541
1e62FADFerredoxin--NADP reductase1.18.1.20.538
1w87FADFerredoxin--NADP reductase1.18.1.20.537
3fpkFADFerredoxin-NADP reductase/0.536
1gr1FADFerredoxin--NADP reductase1.18.1.20.534
1qgzFADFerredoxin--NADP reductase1.18.1.20.532
4y9uFADNADPH--cytochrome P450 reductase/0.528
4yaoFADNADPH--cytochrome P450 reductase/0.525
1j9zFADNADPH--cytochrome P450 reductase/0.519
4uajFADNa(+)-translocating NADH-quinone reductase subunit F/0.518
1b2rFADFerredoxin--NADP reductase1.18.1.20.512
3qe2FADNADPH--cytochrome P450 reductase/0.511
3qfsFADNADPH--cytochrome P450 reductase/0.510
2rc5FADFerredoxin--NADP reductase/0.506
2ok8FADFerredoxin--NADP reductase, apicoplast/0.505
2piaFMNPhthalate dioxygenase reductase/0.503
3jqrFADFerredoxin--NADP reductase, apicoplast/0.503
1gvhFADFlavohemoprotein/0.502
4y9rFADNADPH--cytochrome P450 reductase/0.500
3qfcFADNADPH--cytochrome P450 reductase/0.495
4yafFADNADPH--cytochrome P450 reductase/0.493
3ojxFADNADPH--cytochrome P450 reductase/0.492
1ja1FADNADPH--cytochrome P450 reductase/0.490
3qftFADNADPH--cytochrome P450 reductase/0.490
2vnjFADNADPH:ferredoxin reductase/0.476
2xncFADFerredoxin--NADP reductase, leaf isozyme, chloroplastic1.18.1.20.475
2ewmNAD(S)-1-Phenylethanol dehydrogenase1.1.1.3110.474
3hl0NADMaleylacetate reductase/0.473
3busSAHDemethylrebeccamycin-D-glucose O-methyltransferase/0.470
2bpoFADNADPH--cytochrome P450 reductase/0.468
3c1oNAPEugenol synthase/0.468
1f20FADNitric oxide synthase, brain1.14.13.390.467
1tllFADNitric oxide synthase, brain1.14.13.390.467
2r6hFADNa(+)-translocating NADH-quinone reductase subunit F/0.467
4a322CDGlycylpeptide N-tetradecanoyltransferase/0.466
4b144XBGlycylpeptide N-tetradecanoyltransferase/0.466
1x1bSAHC-20 methyltransferase/0.464
4fk8FADFerredoxin--NADP reductase/0.464
4k1xFADNADPH:ferredoxin reductase/0.463
1ewyFADFerredoxin--NADP reductase1.18.1.20.461
1w34FADFerredoxin--NADP reductase1.18.1.20.461
2vnkFADNADPH:ferredoxin reductase/0.459
4a2zVIQGlycylpeptide N-tetradecanoyltransferase/0.457
4acxS8ZBeta-secretase 13.4.23.460.457
1krhFADBenzoate 1,2-dioxygenase electron transfer component1.18.1.30.455
3ojwFMNNADPH--cytochrome P450 reductase/0.454
2bgjFADNADPH:ferredoxin reductase/0.453
4g2j0WFHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.453
2vnhFADNADPH:ferredoxin reductase/0.452
1a8pFADFerredoxin--NADP reductase/0.451
1c9wNAPAldose reductase-related protein 2/0.451
3dynPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.451
3h3r14HCollagen type IV alpha-3-binding protein/0.451
1xe65FPPlasmepsin-23.4.23.390.450
4bfuZVUPantothenate kinase2.7.1.330.450
4yauFADNADPH--cytochrome P450 reductase/0.450
1amoFMNNADPH--cytochrome P450 reductase/0.449
4b12C23Glycylpeptide N-tetradecanoyltransferase/0.449
4bfxZVXPantothenate kinase2.7.1.330.449
2fapRADPeptidyl-prolyl cis-trans isomerase FKBP1A5.2.1.80.448
2fapRADSerine/threonine-protein kinase mTOR2.7.11.10.448
3f90FMNFlavodoxin/0.448
4bftZVTPantothenate kinase2.7.1.330.448
2bgiFADNADPH:ferredoxin reductase/0.447
2flhZEACytokinin-specific binding protein/0.447
2z7hGG3Geranylgeranyl pyrophosphate synthase/0.447
2pj4414Carboxypeptidase B/0.446
1q0zAKAAclacinomycin methylesterase RdmC3.1.1.950.445
1t4cCOAFormyl-CoA:oxalate CoA-transferase/0.445
3ukoNADAlcohol dehydrogenase class-3/0.445
4jtqNAPAldo-keto reductase family 1 member C2/0.445
1fdrFADFerredoxin--NADP reductase1.18.1.20.444
1x1dSAHC-20 methyltransferase/0.444
1sq5ADPPantothenate kinase2.7.1.330.443
1xddAAYIntegrin alpha-L/0.443
2nr4FMNConserved protein/0.442
3abxRCBGlucanase/0.442
3fcjFADNitroalkane oxidase1.7.3.10.442
4b0qGMFBeta-secretase 13.4.23.460.442
4usqFADPyridine nucleotide-disulfide oxidoreductase/0.442
1nsgRADPeptidyl-prolyl cis-trans isomerase FKBP1A5.2.1.80.441
1nsgRADSerine/threonine-protein kinase mTOR2.7.11.10.441
2ejzSAHDiphthine synthase/0.441
2qjpANJCytochrome b/0.441
2uxoTACHTH-type transcriptional regulator TtgR/0.441
3h3t16HCollagen type IV alpha-3-binding protein/0.441
4q0kGA3Phytohormone-binding protein/0.441
5c6cCMPcGMP-dependent protein kinase 22.7.11.120.441
2bf4FMNNADPH--cytochrome P450 reductase/0.440
3bg7FADPyranose 2-oxidase/0.440
3h3sH15Collagen type IV alpha-3-binding protein/0.440