Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1flmFMNFMN-binding protein

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1flmFMNFMN-binding protein/1.000
3awhFMNFMN-binding protein/0.671
3a6rFMNFMN-binding protein/0.666
2e83FMNFMN-binding protein/0.658
3a6qFMNFMN-binding protein/0.644
3vy2FMNFMN-binding protein/0.642
3vy5FMNFMN-binding protein/0.629
3a20FMNFMN-binding protein/0.600
3amfFMNFMN-binding protein/0.600
1wliFMNFMN-binding protein/0.518
1wlkFMNFMN-binding protein/0.511
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.471
3l6jZ90Alr2278 protein/0.465
4iah1DXAlr2278 protein/0.458
1tj0FADBifunctional protein PutA1.5.5.20.456
3pqbVGPPutative oxidoreductase/0.455
1w6hTITPlasmepsin-23.4.23.390.453
4iae1DXAlr2278 protein/0.453
5eb5FAD(R)-mandelonitrile lyase 14.1.2.100.450
3b6zCO7Enoyl reductase LovC10.449
1xe55FEPlasmepsin-23.4.23.390.446
1dr3TAPDihydrofolate reductase1.5.1.30.445
4z61ILE_THR_GLN_TYS_TYSPhytosulfokine receptor 12.7.11.10.443
1mjbACOHistone acetyltransferase ESA1/0.442
1t2cNAIL-lactate dehydrogenase1.1.1.270.441
4ri1ACOUDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase2.3.1.2020.441
2nq8ZIDEnoyl-ACP reductase/0.440
3d84NDPDihydrofolate reductase1.5.1.30.440