Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1euyQSIGlutamine--tRNA ligase6.1.1.18

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1euyQSIGlutamine--tRNA ligase6.1.1.181.000
2re8GSUGlutamine--tRNA ligase6.1.1.180.795
2rd2QSIGlutamine--tRNA ligase6.1.1.180.741
1qrsATPGlutamine--tRNA ligase6.1.1.180.739
1qtqQSIGlutamine--tRNA ligase6.1.1.180.681
1qruATPGlutamine--tRNA ligase6.1.1.180.643
1gtrATPGlutamine--tRNA ligase6.1.1.180.631
1qrtATPGlutamine--tRNA ligase6.1.1.180.609
4jxxATPGlutamine--tRNA ligase6.1.1.180.608
4jxzATPGlutamine--tRNA ligase6.1.1.180.589
4jyzATPGlutamine--tRNA ligase6.1.1.180.579