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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1esmCOAPantothenate kinase2.7.1.33

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1esmCOAPantothenate kinase2.7.1.331.000
2getCOKPantothenate kinase2.7.1.330.579
2gesCOKPantothenate kinase2.7.1.330.566
2zsdCOAPantothenate kinase2.7.1.330.542
2zsbADPPantothenate kinase2.7.1.330.532
2geuCOKPantothenate kinase2.7.1.330.526
4bfsZVSPantothenate kinase2.7.1.330.520
3aezGDPPantothenate kinase2.7.1.330.517
3af2ACPPantothenate kinase2.7.1.330.513
2gevCOKPantothenate kinase2.7.1.330.509
3af4GCPPantothenate kinase2.7.1.330.503
2zsaADPPantothenate kinase2.7.1.330.499
4bftZVTPantothenate kinase2.7.1.330.475
2zs8ADPPantothenate kinase2.7.1.330.460
3af0GDPPantothenate kinase2.7.1.330.456
3af1GDPPantothenate kinase2.7.1.330.455
4bfxZVXPantothenate kinase2.7.1.330.452
3af3GCPPantothenate kinase2.7.1.330.448