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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
1ej3CZHAequorin-2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
1ej3CZHAequorin-2/1.000
1uhjCZBAequorin-2/0.666
1uhhCZPAequorin-2/0.650
1qv1CZHObelin/0.629
4nqgCZHMitrocomin/0.620
4n1fCZHObelin/0.612
1el4CTZObelin/0.608
1jf0CZHObelin/0.594
1qv0CZHObelin/0.593
1jf2CZHObelin/0.591
1s36CEIObelin/0.553
4mrxCZHObelin/0.543
1q0zAKAAclacinomycin methylesterase RdmC3.1.1.950.462
4b144XBGlycylpeptide N-tetradecanoyltransferase/0.462
4b117I1Glycylpeptide N-tetradecanoyltransferase/0.458
4g2l0WLHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.457
1ry0PG2Aldo-keto reductase family 1 member C3/0.456
2xufTZ4Acetylcholinesterase3.1.1.70.455
3qi4IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.454
3dylIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.453
4klaCHDFerrochelatase, mitochondrial4.99.1.10.453
2yy2IBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.452
3dyqIBMHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.452
1ry8RUTAldo-keto reductase family 1 member C3/0.451
1zgbA1EAcetylcholinesterase3.1.1.70.451
3h3t16HCollagen type IV alpha-3-binding protein/0.450
1ah3TOLAldose reductase1.1.1.210.449
1zgcA2EAcetylcholinesterase3.1.1.70.445
2f3815MAldo-keto reductase family 1 member C3/0.445
4a959MTGlycylpeptide N-tetradecanoyltransferase/0.445
4e907RGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.445
1c7oPPGHemolysin/0.443
3pqbVGPPutative oxidoreductase/0.443
4b13X25Glycylpeptide N-tetradecanoyltransferase/0.443
4b12C23Glycylpeptide N-tetradecanoyltransferase/0.442
4l5b1UXDeoxycytidine kinase2.7.1.740.442
2xugTZ4Acetylcholinesterase3.1.1.70.441
4h7c10HAldo-keto reductase family 1 member C3/0.441
1odcA8BAcetylcholinesterase3.1.1.70.440
2aouCQAHistamine N-methyltransferase2.1.1.80.440
4bbhYBNGlycylpeptide N-tetradecanoyltransferase/0.440
4f4dCHDFerrochelatase, mitochondrial4.99.1.10.440